Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0241 ATGGAATCCAGTGAGCCAATCCCAAACACTCCAAGTCCCACTTGTTCTTTCCCTCTCTCAAACTCTTCTCCTTCTTCCTCATGCTCGCCTCCTCCACAAGTGGTGGTAAGCCCTTGTGCTGCTTGTAAGATTTTAAGGCGGCGATGTGCTGAGAAATGTGTTCTCGCTCCCTATTTCCCTCCTTCTGAACCTGCCAAGTTCACCATTGCTCACAGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCACAGAGAGCTGATGCAGTGAGCAGCATGGTGTACGAGGCAGGTGCAAGAATAAGAGATCCAGTGTATGGTTGTGCAGGTGCGATTTGTCAGCTTCAGAAGCAAGTGAGCGAGCTTCAAGCTCAACTGGCTAAGGCTCAAGCCGAGCTTGTGAACATGCAGCTGCAGCAAGCCAATCTGGTGGCTCTTCTCTGCATGGAAATGTCTCAGACTACTCAGACTCAGACTCAAACGTCTCCTACAAGTACTCGTCCTCCTCAGGAATATTATTCTTCACCACCATCGTTATCTTCATCGTTCGAAGACACAAACTTCATTACTTCAAGCAACCTCAACTTCTTCGCCGAAAGCGCTGGCCTTAACTCTTTGTGGGAGCAGCAGCCACTTTGGACATGA 660 0.4909 MESSEPIPNTPSPTCSFPLSNSSPSSSCSPPPQVVVSPCAACKILRRRCAEKCVLAPYFPPSEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQLQQANLVALLCMEMSQTTQTQTQTSPTSTRPPQEYYSSPPSLSSSFEDTNFITSSNLNFFAESAGLNSLWEQQPLWT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0241 219 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Acco08g0241 219 MobiDBLite consensus disorder prediction 161 184 - -
Acco08g0241 219 Coils Coil 117 144 - -
Acco08g0241 219 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Acco08g0241 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0241 Acco-ChrAcco08 1803351 1804421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0241 33 219 AS2 family AT1G07900 62.434 3.17e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco08g0241 LOB 2.8e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3818 01 53957283 53957971 Acco08g0241 08 1803351 1804421 CCT
Acco08g0241 08 1803351 1804421 Acco08g0241 08 1803351 1804421 ECH