Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0230 ATGGAGGGTATTCGTCAGGGCATTCTTCGACCTCGAGATGGGTTTCCTAACATTTACAGAAGGGAGATGGGGTTGTCCCATCCTCGCGACTTTGCTCGAAGATTTTTAGCTTCCGAGGCTATTGTAAAGCAAATGAATTTGTATGGGAAGTTAAATGGTCATGATGGGTGTGTAAATGCTGTGGAGTTTAACTCTACCGGTGATCTTCTTGTCTCAGGTTCTGATGACCAGCAAGTTATGTTTTGGAATTGGGCATCCAAGACTAAGTTGTTTGAATATCCTTCTGGTCACTCTGACAACATATTTCAGACAAGAATTATGCCATTTTCTGATGACCGCAAAATAGTGACTTCTGCTGGTGATGGCGAGGTAAGGCTTGGCCTTCTCTCAGAGGATGGTTCAATAGAAACTACGATGTTGGGAAAGCACCAAGGTTCTGTATACAAGCTTGCTTTGGAGCCTGGAAGTCCTCACATACTGTATAGCTGTGGTGAAGATGGTCTTATTCAACATTTTGATCTGCGAAGTAGTTCTGCTACAAAACTTTTCCGTTGCTCCTCATTGACAGTGAATAATAAGCAAACTTCAAGCAGGATAAGGTTGAATTCAATTGTGATTGATTCAAGAAATCCAAACTACTTTGCGATTGGAGGATCGGATGAATATGCACGTGTTTATGACATAAGAAGATGCCAATTGGATGCGACAAGTAATTCAGATAGACCTGTTAACACTTTTTGCCCTCATCACTTAATTGGCTCAAATCATGTCCATATTACAGGATTGGCTTACTCAAGCCAGTGCGAGCTCCTTGTCTCTTATAATGATGAGCTCATCTATTTATTTCAGAAGAATATGGGGTTAGGTGGTTCACCTTCCTCTGCTGCATCTGAGGAGTTAAATGCACTTCAACAGGCACGTGTTTACTCTGGTCATAGAAATGCTCGGACAGTTAAAGGAGTGAGCTTCTTTGGCCCTAATGATGAATATGTTTTGAGTGGCTCAGATTGTGGTCATATTTTCATCTGGAAGAAGAAGGATGCTAAGTTGGTGAGATTGATGGTAGGCGATCAACAGGTTGTAAATCAGCTTGAGGCCCACCCACATATTCCCATTCTTGCTACTTGCGGTATTGAAAATGATGTGAAAATATGGGCTCCTCAAGCTAGTGATATCCCTTCAGTTCCTGAAAATGTAGAAGAGATAATGGAGGCAAATAGGCATGGGAGAGAAGATCGATCACGTGTAACTCTTACTCCTGATGTTGTAATGCATGTTCTGCGCTTGCAAAGGCGGCAGACATTGGCATATGTTGAAAGAAGTTACAGTAGAGCTGATATTGTGAGTGATGAAGAAGATTTAGAGGGCTACTTCTTCTGA 1380 0.4188 MEGIRQGILRPRDGFPNIYRREMGLSHPRDFARRFLASEAIVKQMNLYGKLNGHDGCVNAVEFNSTGDLLVSGSDDQQVMFWNWASKTKLFEYPSGHSDNIFQTRIMPFSDDRKIVTSAGDGEVRLGLLSEDGSIETTMLGKHQGSVYKLALEPGSPHILYSCGEDGLIQHFDLRSSSATKLFRCSSLTVNNKQTSSRIRLNSIVIDSRNPNYFAIGGSDEYARVYDIRRCQLDATSNSDRPVNTFCPHHLIGSNHVHITGLAYSSQCELLVSYNDELIYLFQKNMGLGGSPSSAASEELNALQQARVYSGHRNARTVKGVSFFGPNDEYVLSGSDCGHIFIWKKKDAKLVRLMVGDQQVVNQLEAHPHIPILATCGIENDVKIWAPQASDIPSVPENVEEIMEANRHGREDRSRVTLTPDVVMHVLRLQRRQTLAYVERSYSRADIVSDEEDLEGYFF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0230 459 SUPERFAMILY WD40 repeat-like 43 385 IPR036322 GO:0005515
Acco08g0230 459 Pfam WD domain, G-beta repeat 49 83 IPR001680 GO:0005515
Acco08g0230 459 Pfam WD domain, G-beta repeat 305 344 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 86 128 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 191 227 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 133 173 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 347 386 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 302 344 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 239 283 IPR001680 GO:0005515
Acco08g0230 459 SMART WD40_4 44 83 IPR001680 GO:0005515
Acco08g0230 459 Gene3D - 37 388 IPR015943 GO:0005515
Acco08g0230 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 92 IPR001680 GO:0005515
Acco08g0230 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 83 - -
Acco08g0230 459 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 17 446 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0230 Acco-ChrAcco08 1694132 1696880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0230 49 261 Eukaryotic Initiation Factors Gene Family AT2G46290 23.288 5.34e-07 49.7