Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0199 ATGTCTTCCAATTCAGGCACGTCTTTGTGGGAAGGACACAAGGCATATTCAATTATCGTATTTGCTGCCGTCGTCACCATAGTAACATTCTACGGCTTGTGTCAGTGCTACTTGAATGGAGGCCCTCGCGCTAGGTCCTCTAGAAACCAGCCTTCAAGAGGGGATTTGAACGAGCCTGATACTGATAATCGTCATCATTCTATACAGATTCAAAGTCTTGGTTTAGAGTTGTGGGTCGTATCATCTCTTCCGTCGTCTCAGTTTAAGAAGAATGAGGGAAGTAACAAAGAGTGTGCGATATGCTTGGCAGAGTTTGAAGAAGAAGAATGGGTTAAGAGACTACCTAGCTGCGCTCATGTCTTTCATGTTTCTTGCATAGCCACCTGGTTTCGGTCTCGCTCAAATTGTCCTATCTGCAGATCTAATGTCAATCATCAAGATCATCTCGCTCTTAGCTTGGAGTCATCTGTTTCTAACTACGCGTCGCCTGACGAGACGTTGAGCAAAGAAGAGCTTTCGCCAGAAAGGCCTTCACAATTAGGCAGTCACACTACAACACTACAATCCACCTCACGTTCCAATTGA 585 0.4513 MSSNSGTSLWEGHKAYSIIVFAAVVTIVTFYGLCQCYLNGGPRARSSRNQPSRGDLNEPDTDNRHHSIQIQSLGLELWVVSSLPSSQFKKNEGSNKECAICLAEFEEEEWVKRLPSCAHVFHVSCIATWFRSRSNCPICRSNVNHQDHLALSLESSVSNYASPDETLSKEELSPERPSQLGSHTTTLQSTSRSN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0199 194 SUPERFAMILY RING/U-box 89 146 - -
Acco08g0199 194 SMART FANCL_C_2 94 148 - -
Acco08g0199 194 MobiDBLite consensus disorder prediction 43 63 - -
Acco08g0199 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 162 - -
Acco08g0199 194 SMART ring_2 98 139 IPR001841 -
Acco08g0199 194 Pfam Ring finger domain 96 140 IPR001841 -
Acco08g0199 194 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Acco08g0199 194 MobiDBLite consensus disorder prediction 173 194 - -
Acco08g0199 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 149 IPR013083 -
Acco08g0199 194 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0199 Acco-ChrAcco08 1381329 1381913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0199 42 142 C3H Transcription Factor Family AT2G27940 45.098 3.66e-21 85.5