Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0195 ATGGTTGAGCAAGAAATGAGAAAAGGTCCATGGACGGAACAGGAGGACATAAAACTGATGTCGTTTGTGGGATTTTTTGGAGATCGAAGATGGGATTTTATTGCCAAGATTTCAGGTTTGCATAGAACAGGTAAAAGTTGCCGTTTACGTTGGGTTAATTACCTTCATCCTGGTCTCAAACGGGGCAAGATGACCCCCCAAGAAGAGCGTCTCGTCCTCGACCTTCACTCTAAATGGGGAAATAGGTGGTCAAGAATCGCTCGCAAATTGCCAGGACGCACTGATAATGAGATTAAGAATTACTGGAAGACTCACATGAGGAAGATGGCTCAAGAGAAAAAGCGAGCAGCCGCTGCTAATAATTTATCACCTTCATCATCATCAGCATCATTCTCCAAGAACAGTACTACTGGAGAAGAAAGCTTTTATGACACAGGAGGTCCTGGTAATAACATGACATCTTCCACAGAGATACCAATGATAGGTCAAGATCAAGAAGAAGGGTACTCTATGGATGATATATGGAAAGATATTGAAGTGTCAGAAGAGAATAATAACAGTGAAGAGGGCTGCAACTTCTCTTGTCCTTCATGGGAGTACTCTGCTACTTCAGACTCGTTATGGGTTATGGACGAAGAGGAAAGTAAGATTTTTGACCCATTTTTTCCCTGTTACGAACAAGCAGGGACCTCACTACTTCTCTAA 705 0.4255 MVEQEMRKGPWTEQEDIKLMSFVGFFGDRRWDFIAKISGLHRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLDLHSKWGNRWSRIARKLPGRTDNEIKNYWKTHMRKMAQEKKRAAAANNLSPSSSSASFSKNSTTGEESFYDTGGPGNNMTSSTEIPMIGQDQEEGYSMDDIWKDIEVSEENNNSEEGCNFSCPSWEYSATSDSLWVMDEEESKIFDPFFPCYEQAGTSLLL 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0195 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Acco08g0195 234 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Acco08g0195 234 MobiDBLite consensus disorder prediction 118 154 - -
Acco08g0195 234 MobiDBLite consensus disorder prediction 112 154 - -
Acco08g0195 234 FunFam Myb transcription factor 8 60 - -
Acco08g0195 234 SMART sant 7 57 IPR001005 -
Acco08g0195 234 SMART sant 60 108 IPR001005 -
Acco08g0195 234 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Acco08g0195 234 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Acco08g0195 234 CDD SANT 63 106 IPR001005 -
Acco08g0195 234 Gene3D - 63 135 - -
Acco08g0195 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Acco08g0195 234 CDD SANT 10 55 IPR001005 -
Acco08g0195 234 Gene3D - 8 60 - -
Acco08g0195 234 FunFam MYB transcription factor 63 134 - -
Acco08g0195 234 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Acco08g0195 234 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Acco08g0195 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 133 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0195 Acco-ChrAcco08 1336753 1338058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0195 1 232 MYB Transcription Factor Family AT5G59780 56.800 2.19e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g0195 Myb_DNA-binding 1.5e-12 CL0123