Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0173 ATGCTTGAAGCTGCCATGGAGGAAGACAAAGCATCTATAGTGCAGAGCTCGATTGACTCGATAAATGAGATAGCTGCGATCTCGGACTACAGGACCACAGTCAAGAAGCACTACTGCAATTTGGCAAGAAGGTTGAAATTGTTGATTCCAATGTTCGAAGAGATTAGGTACAGCAAAGAGGCGTCACCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCAAGGGAGCTTTAGAATCGGCCAAACAACTTCTCAGATTCGGTAGCGAAGGCAGCAGGATTTATATGGTCTTAGAGAGGGAGCAAATTACAAAACAATACCTCGAGGTGACAACTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAATTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGAGCCAAAGGAAGGGTTGATGCACCTGATGATGAATTGTACGAGGATATCTTGTCACTTTATGATAAGAGCAGTGATGCAGCAACAGATCCAGCTGTTCTAAGGAGATTAGCTGAAAAATTGCACTTGATGGGAATATCTGATCTTACACAAGAGTCACTAGCTTTGCATGAGATGGTGTCAGCAAGTGGTGGAGACCCGGGGGCAAGTATTGAGAAGATGTCTATGTTATTGAAAAAAATAAAGGATTATGTACAAACAGAGAATCTAGTCATGGATGATACTGAAGGTGGAAAAGGCCTTTCTTCTTTCAGTAGCAGCCATGGGATGAGTGAAAAAGGTCATCAAACCCCTGTTATTCCTGACGATTTTCGATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTTATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAAGCAGGGCATGGCACCTGTCCGAAAACACAGCAGACACTTACTAGCACTGTTCTCACACCCAATTATGTCTTGAGAAGCCTCATAGCACAATGGTGTGAAGCTAATGGCATGGAGCCTCCAAAACGACCCAGCAGTTCCCGGCCCAGTAAGTCAGCATCTTCCTGCTCACCAGCTGAGCATAGTAAGATCGAAAATCTTCTTCGTAAGCTTACATCTGGTAATGCTGAAGACCAGAGATCAGCGGCAGGTGAGATCCGTCTGTTAGCGAAACGAAATGCAGATAACCGTGTAGCCATTGCTGAAGCTGGTGCAATACCACTCCTTGTTGACCTCCTCTCTATACCTGACTCCCGAACTCAAGAGCACGCCGTTACAGCTCTTTTAAATCTTTCCATTTGTGAGAACAACAAAGGCGGTATCATATCTTCTGGGGCAGTTCCTGGCATAGTTCATGTGCTCAGGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTTTTCAGCCTCTCAGTCGTAGATGAAAATAAGGTTACTATTGGATCCTCAGGAGCCATCCCTCCACTAGTAACACTGCTGAGTGAGGGCACCCAAAGGGGTAAAAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATATACCAGGGCAATAAGGGAAAAGCAGTGAGGGCAGGTATTGTTCCTACACTAATGCGACTGCTGACAGAACCCGGTGGGGCAATGGTTGATGAAGCATTGGCCATATTGGCAATATTGTCTAGTCATCCAGAAGGGAAGATTGCAATTGGTGCTGCGGAGGCTGTACCAGTTTTGGTAGGGGTCATTGGGAACGGATCCCCAAGAAACAAAGAGAATGCAGCTGCCGTTTTAGTACACCTTTGTTCCGGAGATCAGCAATATCTCGCGCAAGCTCAAGATCTCGGGGTGATGGCTCCATTGGCGGATCTTGCTCAAAATGGTACAGAGAGAGGCAAAAGAAAGGCTGCACAATTGATCGAGCGAATGAGCAGATTCCTTGGGGAGCAGCAGCAGGAAGTTCAAACGCAGACTGAAGTGCAATTTCAGAATGATGATATACATCCCCCTTCTATTGCTAACCTTATTGATAGTTGA 2010 0.4517 MLEAAMEEDKASIVQSSIDSINEIAAISDYRTTVKKHYCNLARRLKLLIPMFEEIRYSKEASPEETLKALISFKGALESAKQLLRFGSEGSRIYMVLEREQITKQYLEVTTQLEQALSGISYDKFDISDEVKEQVELVLAQFRRAKGRVDAPDDELYEDILSLYDKSSDAATDPAVLRRLAEKLHLMGISDLTQESLALHEMVSASGGDPGASIEKMSMLLKKIKDYVQTENLVMDDTEGGKGLSSFSSSHGMSEKGHQTPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSRPSKSASSCSPAEHSKIENLLRKLTSGNAEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVDLLSIPDSRTQEHAVTALLNLSICENNKGGIISSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGIVPTLMRLLTEPGGAMVDEALAILAILSSHPEGKIAIGAAEAVPVLVGVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAQDLGVMAPLADLAQNGTERGKRKAAQLIERMSRFLGEQQQEVQTQTEVQFQNDDIHPPSIANLIDS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0173 669 SUPERFAMILY RING/U-box 260 339 - -
Acco08g0173 669 PANTHER U BOX DOMAIN-CONTAINING 35 634 - -
Acco08g0173 669 MobiDBLite consensus disorder prediction 340 357 - -
Acco08g0173 669 CDD RING-Ubox_PUB 264 316 IPR045210 -
Acco08g0173 669 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Acco08g0173 669 MobiDBLite consensus disorder prediction 333 357 - -
Acco08g0173 669 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Acco08g0173 669 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Acco08g0173 669 Gene3D - 9 123 IPR036537 GO:0007166
Acco08g0173 669 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Acco08g0173 669 Pfam Neurochondrin 526 648 IPR008709 -
Acco08g0173 669 SMART arm_5 431 471 IPR000225 GO:0005515
Acco08g0173 669 SMART arm_5 554 594 IPR000225 GO:0005515
Acco08g0173 669 SMART arm_5 596 636 IPR000225 GO:0005515
Acco08g0173 669 SMART arm_5 390 430 IPR000225 GO:0005515
Acco08g0173 669 SMART arm_5 513 553 IPR000225 GO:0005515
Acco08g0173 669 SMART arm_5 472 512 IPR000225 GO:0005515
Acco08g0173 669 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Acco08g0173 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Acco08g0173 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Acco08g0173 669 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Acco08g0173 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Acco08g0173 669 FunFam RING-type E3 ubiquitin transferase 344 640 - -
Acco08g0173 669 SUPERFAMILY ARM repeat 361 645 IPR016024 -
Acco08g0173 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Acco08g0173 669 FunFam RING-type E3 ubiquitin transferase 263 336 - -
Acco08g0173 669 Gene3D - 346 661 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0173 Acco-ChrAcco08 1148641 1152712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0173 6 669 U-box Gene Family AT3G46510 70.526 0.0 941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g0173 08 1148641 1152712 Acco08g0173 08 1148641 1152712 ECH