Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco08g0172 | ATGCCGCGGCAAGCAATCGAGGCCACCTTCTCTGGGGGAGGTGGCACTGGCTTGAGGTGTGGCACCTCTCTGCAGGGGAAGATATACCAAAGAGGGAAAGGGATGGGTCAGGGTCTGAGCTGCGCAGGGAGCCATGAACATGGCCTCTTCACTGCGGTACAGCATGGAGATAACTCCACTGTCAGAAATCTCTTACAGAGAGACCCAGATATTGTGCATCACACTACCGTCTACGATCGCCATTCTGCTCTTCATATTGCCGCCGCTAATGGCCAGATCGAGATTCTGTCTCTGCTGTTAGATGGATCTGTTAATCCAGACGTCTTGAATCGTCAAAAGCAGACTCCGCTTATGTTGGCTGCAATGAACGGAAAGATCGCCTGCGTGAAAATGCTCCTTGAGTTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTATGCCGCCTACTATGGTCATTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAGTCTAGTCCGGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGATGGTAAAGGAGCGACGCCGTTGCACCTGGCTGCCCGTCAGAGACGACCTCAATGTGTGCATATTCTGTTAGATAATGGAGCTCTTGTCTGTGCTTCAACTGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGGGGATCTCTGGATTGCATCCGTGAACTGTTGGCATGGGGTGCAGATCGTCTTCAACGGGATGCTTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCACAAGCATGGAGCATGTGCAGCATTGTTAAATCCTACATCTGCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAACTCAATCCAGAGGCCAAAGCATTATTAGAACGGGCCTTGATGGACGCAAACAGGGAAAGGGAGAAAAATATATTGAAAGGAAGCGCTTACTCTCTTCCATCTCCATCACATTCTGATAATGGGGTAGATGACAATATCTCCGAGGCCAGTGAGACAGAACAGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGAACTGTGGCCACCAGATGTGTGCACAATGCACTTTAGCCCTCTGTTGCCACAACAAGCCTAATCCCGCTACTGCTTGCCTTACTCCTCCAGTTTGTCCGTTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTAAAGATAGAGAGTCACGAGGACACAGATGTAGAATCAGGGGATGTCAGTTCTTCAATGCTAAGCAAATCCAAGAAAGCCCGAAACTTGAATGAAGGCAGCAGCAACAGCTTCAAGGGACTATCATTCGGAAAGATGAGTGGACGCAGCTCTGGAAGGATTGCTGCGGACAATGAGTGGGTTGATAAAGAGTGA | 1431 | 0.4948 | MPRQAIEATFSGGGGTGLRCGTSLQGKIYQRGKGMGQGLSCAGSHEHGLFTAVQHGDNSTVRNLLQRDPDIVHHTTVYDRHSALHIAAANGQIEILSLLLDGSVNPDVLNRQKQTPLMLAAMNGKIACVKMLLEFGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRPQCVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPEAKALLERALMDANREREKNILKGSAYSLPSPSHSDNGVDDNISEASETEQCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHEDTDVESGDVSSSMLSKSKKARNLNEGSSNSFKGLSFGKMSGRSSGRIAADNEWVDKE | 476 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat profile. | 191 | 223 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | Gene3D | - | 37 | 145 | IPR036770 | - | |
| Acco08g0172 | 476 | Pfam | Ankyrin repeats (many copies) | 229 | 266 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 44 | 73 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 79 | 108 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 228 | 257 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 191 | 220 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 112 | 141 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SMART | ANK_2a | 146 | 176 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | MobiDBLite | consensus disorder prediction | 426 | 456 | - | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat profile. | 112 | 144 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat region circular profile. | 228 | 254 | - | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat region circular profile. | 79 | 111 | - | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat region circular profile. | 112 | 139 | - | - | |
| Acco08g0172 | 476 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 338 | 418 | IPR013083 | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat profile. | 228 | 260 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | ProSiteProfiles | Zinc finger RING-type profile. | 355 | 404 | IPR001841 | - | |
| Acco08g0172 | 476 | Pfam | Ankyrin repeats (3 copies) | 49 | 142 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | Pfam | Ankyrin repeats (3 copies) | 143 | 217 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | Gene3D | - | 146 | 337 | IPR036770 | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat region circular profile. | 191 | 216 | - | - | |
| Acco08g0172 | 476 | MobiDBLite | consensus disorder prediction | 421 | 476 | - | - | |
| Acco08g0172 | 476 | SUPERFAMILY | RING/U-box | 349 | 409 | - | - | |
| Acco08g0172 | 476 | ProSiteProfiles | Ankyrin repeat profile. | 79 | 111 | IPR002110 | GO:0005515 | |
| Acco08g0172 | 476 | SUPERFAMILY | Ankyrin repeat | 49 | 284 | IPR036770 | - | |
| Acco08g0172 | 476 | PANTHER | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN | 186 | 281 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco08g0172 | Acco-ChrAcco08 | 1129641 | 1132625 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco08g0172 | 84 | 281 | Miscellaneous Gene Families | AT5G02620 | 28.641 | 5.12e-07 | 50.1 |