LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco08g0164	ATGGGAAGTTGTTTGGGAACCCAAATTAAAGCTGAGAGCCAGTGTCACGCAGCGCCGAATTCCAAACACGTGAGCACAGATGGATGTGATCTGAGCAGCACAGTAAGTGATGCCTCAAAGGCCTTAGCGACTCATACTCGCCGGAGTGAGGGTGAAATCTTGCAGTCATCCAATTTGAAGAGATTTTCTTATGCAGAACTAAAAGCGGCCACACGAAATTTCCGACACGATAGTGTTTTAGGAGAAGGTGGTTTTGGTTCAGTTTTCAAAGGACGGATTGATGAGCAATCCCTTACTGCTGCCAAGCCAGGCACTGGCATTGTTATTGCTGTGAAAAAACTTAAGCAGAATAGCTTGCAAGGTCACAGTGAGTGGTTGGCAGAAGTGAATTTTCTGGGACAATTTTGTCATCCCCATCTTGTAAAGTTGATCGGGTATTGCCTTGAAAACGAACATCGTCTTCTGGTGTATGAATTTATGCCTCGAGGCAGCCTGGAGAATCATTTATTCAGGAGGGGCTCTTATTTCCAACCTCTCTCTTGGAGGCACCGTCTGAAGGTCGCTCTTGGTGCTGCCAGAGGGCTTGCATTTCTTCACAGTGCTGAAACGAAAGTGATATATAGGGACTTGAAGACCTCAAATATCTTGCTTGACTCAAATTACAATCCAAAACTTTCTGATTTTGGGCTGGCCAAGCATGGACCAGCAGAGGACAAAAGTCATGTCTCCACTAGAGTATTAGGAACCTATGGATATGCAGCTCCCGAATATGTAGCCACCGGTCACCTGACTGCAAAGAGTGATGTATATAGTTTCGGAGTGGTACTAGTAGAAATCTTATCAGGCCGGCGAGCTATGGACAAGGGTCGACCATCAGGACAACGCAATTTGGTAAAGTGGGCTAAGCCATATCTAGCAAACAAACGTAAACTCTCTGTTGTGCTGGATACTCGTGTTGAAGGTCAGTATACAATGGAGGAGGCTCACAAGACAGCTACACTGGCATTGCGATGCATTTCGATCGAACCCAAGTTGAGGCCGACCATGGACGAGGTTGTTTCTACATTGGAGCAGCTTCAAGTTCCTAATGTAAATGGAGGCAAACCAAAGCCCTCTGTAAATAGATCCAGTCGCAGAAAAAGTGAAGGTGGCGTTAAGAATGAGAAGACCACCACAGCTTATCCCCGTCCATCTGCTTCCGCTCTCTATGCTTGA	1215	0.4617	MGSCLGTQIKAESQCHAAPNSKHVSTDGCDLSSTVSDASKALATHTRRSEGEILQSSNLKRFSYAELKAATRNFRHDSVLGEGGFGSVFKGRIDEQSLTAAKPGTGIVIAVKKLKQNSLQGHSEWLAEVNFLGQFCHPHLVKLIGYCLENEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWRHRLKVALGAARGLAFLHSAETKVIYRDLKTSNILLDSNYNPKLSDFGLAKHGPAEDKSHVSTRVLGTYGYAAPEYVATGHLTAKSDVYSFGVVLVEILSGRRAMDKGRPSGQRNLVKWAKPYLANKRKLSVVLDTRVEGQYTMEEAHKTATLALRCISIEPKLRPTMDEVVSTLEQLQVPNVNGGKPKPSVNRSSRRKSEGGVKNEKTTTAYPRPSASALYA	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco08g0164	404	MobiDBLite	consensus disorder prediction	360	404	-	-
	Acco08g0164	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Acco08g0164	404	Pfam	Protein tyrosine and serine/threonine kinase	77	356	IPR001245	GO:0004672\|GO:0006468
	Acco08g0164	404	PANTHER	OS01G0588500 PROTEIN-RELATED	41	360	-	-
	Acco08g0164	404	SUPERFAMILY	Protein kinase-like (PK-like)	49	356	IPR011009	-
	Acco08g0164	404	Gene3D	Phosphorylase Kinase; domain 1	48	159	-	-
	Acco08g0164	404	ProSiteProfiles	Protein kinase domain profile.	74	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g0164	404	CDD	STKc_IRAK	80	359	-	-
	Acco08g0164	404	SMART	serkin_6	74	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco08g0164	404	ProSitePatterns	Protein kinases ATP-binding region signature.	80	113	IPR017441	GO:0005524
	Acco08g0164	404	FunFam	Serine/threonine-protein kinase PBS1	160	374	-	-
	Acco08g0164	404	FunFam	Serine/threonine-protein kinase BIK1	41	159	-	-
	Acco08g0164	404	Gene3D	Transferase(Phosphotransferase) domain 1	160	368	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco08g0164	Acco-ChrAcco08	1074915	1076875	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco08g0164	52	356	Glycoside Hydrolase	AT3G07070	49.020	2.56e-103	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Acco08g0164		PK_Tyr_Ser-Thr	1.7e-47	CL0016