Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0159 ATGGATCTTCACTTTGATGGAAGTCAAGGTTCTATAAATGGTTATAAACTTGATGATGGCGCCGCCAGCTCCGATTCCAATTATTTCCCGCATCCAGCCAATGATTGGGATATCAACGAAAACTATTGGAAACTTCTTAATCTCACAACCGATCCGTTGTATCAATCTTATGCCGCTCCGTTCAATTTTTCCTTGCTTGGTAGCGTGAAATACGAAGAATCAGAGCGGTTAGTTTCATCCTCGACTATAAACCCTGAAGGAGGCATGTCAGATGTGGCAGCTGTGTCTAAAACTTCGCCCCCAGATCCTTCGCTGGAGGACGCTGACTTTTCAGAAACTATCAGGTACATAAGCCAAATGCTTATGGAAGAGAACTTTGAACAGAAACCAAGCATGTTTTATGATCCTCTGAGTCTACAAGTCACGGAGAAATCATTCTATGACGCTCTCAGAAAAGATCATCCTCTTTCCCCCAATCAGCATCCCCTAGACATTCATCAGAATCTTGATGGCACAGATGATAACTGTTGTGGTACTAGTATTGACAGTAGCAGCACCAACAAGTCTCGTGGCGCTAATACGCCCTCTTTCTCTGATGCTCCATTTGCTGGTGATTATGCGTCCCAGTTAAATTTTCAACCTATCTCTGAGAAGCCCTCTCAACCTCCGAGTGCTTATACTTACATCAGCAACGGATTGTCAGATGCGGATTCCTCTTTTACTAGGATCTTGGCTCAAAATATCTTCACTGATGCAGAATCTGTTTCACAATTTAAAAGGGGATTGGAAGAAGCTAGCAAGTTTCTTCCCAGAGGACTTCAACTTGTCACTGATCCGGAAAGCAACAATATGTTTCCAGAGTTAATGGGAGCGGCTGAAAAGGCAGTGGGAAATTTTCGGGAGAATTCACATGGATTAAAGGGTAGGAAGAATCATGAACGTGAAGGTAGTGACACTGAAGAAGGGAGAAGTAACAAGCAGTCGGCAGTGTATGTGGACGAGAGCGAGCTATCTGATATGTTTGATAACGTGTTGCTTAGTGTTGAGAGTGTTCCATTAAGTGAGGAACACCACATATGGTTGCAGAATGGAACAGACAAGGCAAATGAGCCAAGTGAACAGCCAAATTCATCAAATGGGGCGAAGACCCGCGGTAGGAGACAAGGCAGGAAGAAGGAAACCGTGGATTTGAGGACTCTTATGTCTCTATGTGCGCAAGCTGTGTCTGCATGTGACAGCAGAAGTGCCAATGAACTACTAAAGCAGATAAGGCAGCATTCTTCCCCAATGGGTGATGCATCACAGAGGCTGGCTCATTACTTTACCAATGGCCTTGAGGCACGCTTGTCTGGCTGCGGTACTGGAACCCAAATATTCTATGCCTCTCTAAGCTCCAAGAGGATATCTGCTTCTCAAATCTTGAGAGCTTACAAAGTTCTAATATCTGTCTGCCCCTTCAGGAGGTTTCAATATTTTTTTGCAAATAAGATGATTTTTCACGCTGCTGAAAAGACAGAAACTCTTCATATTGTCGATTTTGGCATTCAATATGGTTTCCAGTGGCCAATACTTATCAAGTTCCTTTCGCAAAGAGCTGGTGGGCCTCCGAAGCTACGCATTACAGGGATAGAAGTGCCTCAAGCTGGGTTTCGTCCCTCAGAATTAATTGAGGAGACCGGTCGACGTCTATCTAATTATTGCAAACGTTTTAATGTTCCGTTTGAATACACAGCCATAGCATCACAAAACTGGGAAACCATCCCGTTAAAGGACTTTAAGATCGAGAGAAACGAACTGCTTGCTGTGAACTGTCTGCAGAGATTTAAGAATTTACCGGACGAGACAATTGAAGCGAAGAGTCCTAGAGATGCAGTTTTCAACTTGATCAGAAAGATGAACCCTGATATATTTGTTCAATCCATTGTGAACGGATCCTACAATGCGCCTTTCTTTGCGTCACGGTTCAAAGAGGCAATGTTCCATTATTCTGCAATGTATGATATGTTTGACACTGTCATACCTCGTGATAATGAATGGAGGCTGATGCTCGAGAGAGAGTTTTTGGGTCGGGAGATCATGAATGTGGTTGCGTGTGAAGGGATCGAGAGGGTTGAGAGGCCTGAGTCATACAAACACTGGCAAGTGAGGGGGACGAGGGCTGGTTTCAAGCAGCTGCCACTGCCACGGGAGATAATGGTCAAATTCAGTGAAAAGTTGAAGGAATGGTATCACAGGGATTTTGTAATGGATGAAGACAATAACTGGATGCTTCAGGGCTGGAAGGGCCGCATCATTTTTGCTTCCACATGTTGGGTGCCATCATAA 2325 0.4422 MDLHFDGSQGSINGYKLDDGAASSDSNYFPHPANDWDINENYWKLLNLTTDPLYQSYAAPFNFSLLGSVKYEESERLVSSSTINPEGGMSDVAAVSKTSPPDPSLEDADFSETIRYISQMLMEENFEQKPSMFYDPLSLQVTEKSFYDALRKDHPLSPNQHPLDIHQNLDGTDDNCCGTSIDSSSTNKSRGANTPSFSDAPFAGDYASQLNFQPISEKPSQPPSAYTYISNGLSDADSSFTRILAQNIFTDAESVSQFKRGLEEASKFLPRGLQLVTDPESNNMFPELMGAAEKAVGNFRENSHGLKGRKNHEREGSDTEEGRSNKQSAVYVDESELSDMFDNVLLSVESVPLSEEHHIWLQNGTDKANEPSEQPNSSNGAKTRGRRQGRKKETVDLRTLMSLCAQAVSACDSRSANELLKQIRQHSSPMGDASQRLAHYFTNGLEARLSGCGTGTQIFYASLSSKRISASQILRAYKVLISVCPFRRFQYFFANKMIFHAAEKTETLHIVDFGIQYGFQWPILIKFLSQRAGGPPKLRITGIEVPQAGFRPSELIEETGRRLSNYCKRFNVPFEYTAIASQNWETIPLKDFKIERNELLAVNCLQRFKNLPDETIEAKSPRDAVFNLIRKMNPDIFVQSIVNGSYNAPFFASRFKEAMFHYSAMYDMFDTVIPRDNEWRLMLEREFLGREIMNVVACEGIERVERPESYKHWQVRGTRAGFKQLPLPREIMVKFSEKLKEWYHRDFVMDEDNNWMLQGWKGRIIFASTCWVPS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0159 774 MobiDBLite consensus disorder prediction 303 322 - -
Acco08g0159 774 MobiDBLite consensus disorder prediction 176 196 - -
Acco08g0159 774 ProSiteProfiles GRAS family profile. 388 772 IPR005202 -
Acco08g0159 774 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 329 762 IPR005202 -
Acco08g0159 774 MobiDBLite consensus disorder prediction 364 393 - -
Acco08g0159 774 MobiDBLite consensus disorder prediction 80 107 - -
Acco08g0159 774 Pfam GRAS domain family 398 771 IPR005202 -
Acco08g0159 774 MobiDBLite consensus disorder prediction 300 330 - -
Acco08g0159 774 MobiDBLite consensus disorder prediction 176 200 - -
Acco08g0159 774 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0159 Acco-ChrAcco08 1033987 1036311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0159 113 774 GRAS Transcription Factor Family AT1G07530 48.718 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Acco08g0159 GRAS 2.7e-110 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3880 01 54378040 54380343 Acco08g0159 08 1033987 1036311 CCT
Acco08g0159 08 1033987 1036311 Acco08g0159 08 1033987 1036311 ECH
Acco05g1400 05 29505431 29507230 Acco08g0159 08 1033987 1036311 ECH