Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0138 ATGGAGTCTGAAGATAAGGCAACATCCTCGTCAGAAACAAAGCAAAGTGATGAGCAAGGAGCAAGTCATCAAGTGACAAGGTCGTACGAGTGTAGCTTCTGTAAAAGGGGGTTCTCTAATGCACAAGCATTGGGAGGACACATGAACATTCACAGGAAAGACAAAGCCAAACTGAAGCAATCTTCCAACGACGCCCATCGTCTTCGTCGTCGTCGTCATCAGCCTGAATCTTTGGATGTTCACAGTAAGGTCGAAGCAGACAGAACCAGAGACAACGAAACCTCCGAACTTCACATAAAGCAGCTTCCTTTATTTGCAGAAACACCTAGTGGCGAAACACAAAAGCCAGAAGAATTAGGTCATGTTCATGATAGAGAAATTGCTGAAGAAATCAAGGGTTCATCGTCATCGGATTTAGACCTTGAACTCAGACTAGGGCCTGACCCACCCTCTCCCACTATTGGTACCAGAAATTTTTTTTGA 483 0.4472 MESEDKATSSSETKQSDEQGASHQVTRSYECSFCKRGFSNAQALGGHMNIHRKDKAKLKQSSNDAHRLRRRRHQPESLDVHSKVEADRTRDNETSELHIKQLPLFAETPSGETQKPEELGHVHDREIAEEIKGSSSSDLDLELRLGPDPPSPTIGTRNFF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0138 160 MobiDBLite consensus disorder prediction 1 26 - -
Acco08g0138 160 Gene3D Classic Zinc Finger 5 93 - -
Acco08g0138 160 Pfam C2H2-type zinc finger 29 53 - -
Acco08g0138 160 SMART c2h2final6 29 51 IPR013087 -
Acco08g0138 160 MobiDBLite consensus disorder prediction 48 97 - -
Acco08g0138 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Acco08g0138 160 MobiDBLite consensus disorder prediction 114 137 - -
Acco08g0138 160 SUPERFAMILY beta-beta-alpha zinc fingers 27 56 IPR036236 -
Acco08g0138 160 MobiDBLite consensus disorder prediction 44 160 - -
Acco08g0138 160 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Acco08g0138 160 PANTHER OS07G0101800 PROTEIN 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0138 Acco-ChrAcco08 924446 924928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0138 26 156 C2H2 Transcription Factor Family AT3G53820 39.130 3.61e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco08g0138 zf-C2H2_6 7.1e-06 CL0361