Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0113 ATGAGGAAGCCCGAATCTGGGAAAAACAACAACAATAACAAGCTGAGGAAGGGGCTGTGGTCACCGGAAGAAGATGACAAGCTAATGAACTACATGCTAAACAATGGACAAGGTTGTTGGAGTGATGTGGCCAGGAATGCTGGCTTGCAACGATGTGGCAAAAGTTGTCGCCTTCGTTGGATCAATTACTTGAGGCCTGATCTTAAGCGTGGCGCTTTCTGTCCCCAGGAAGAAGAACTTATCATCCATCTTCATTCCCTTCTCGGCAACAGATGGTCACAAATAGCGGCGCGCTTGCCCGGGCGAACCGACAACGAAATCAAGAATTTCTGGAACTCCACAATAAAGAAAAGGCTCAAGCTCATGTCATCATCCACCACCCCAACCTCACAAAATGCAAGCGAGTCTTCTTCTTTATTATCTGAGCATAATATTAAAGACCTCAACAATGTCATGGGAGGTTTCATGCCTATGTTCCACAACAACCTAATTGAGAGATTGCCTTTGCTTGAGCACGGACCAAACGCGCAAGCATCTTCAGATGGATCATTCTTCAACACTAATAATGGAGGGCCTTGCTTCACACAAAATGTTATTCACCACAATAATATTCATAATGGTTTTTATGTAGAAAATGGAGTTTTTGGGATTGGGAGTGTAAATATTGGAGCAGAAGGGGAGTTGTTTGTGCCTCCTCTAGAGAGTGTTAACACTATAACTGATAACCTGGAGAATAGGGACACTAACGTTAATAGTAACTTGGACAACATAAACAGCATCGTTAATAACTGCAACAATATTAGCAGCAACAAGAATAATAATAGAGCTGAGAATAGAGGTGGCATGATGGAGAATCTTTTTGAGGAAGAGTTAACTTTGGGAGACTGGGACTTAGAGGACTTGATGAAAGATGTTTCATCCTTTCCCTTTCTTGATTTCTCAAGCTGA 948 0.4241 MRKPESGKNNNNNKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFCPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKLMSSSTTPTSQNASESSSLLSEHNIKDLNNVMGGFMPMFHNNLIERLPLLEHGPNAQASSDGSFFNTNNGGPCFTQNVIHHNNIHNGFYVENGVFGIGSVNIGAEGELFVPPLESVNTITDNLENRDTNVNSNLDNINSIVNNCNNISSNKNNNRAENRGGMMENLFEEELTLGDWDLEDLMKDVSSFPFLDFSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0113 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Acco08g0113 315 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Acco08g0113 315 CDD SANT 75 112 IPR001005 -
Acco08g0113 315 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Acco08g0113 315 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Acco08g0113 315 SMART sant 16 66 IPR001005 -
Acco08g0113 315 SMART sant 69 117 IPR001005 -
Acco08g0113 315 Gene3D - 71 144 - -
Acco08g0113 315 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Acco08g0113 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Acco08g0113 315 FunFam MYB transcription factor 14 70 - -
Acco08g0113 315 CDD SANT 20 64 IPR001005 -
Acco08g0113 315 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Acco08g0113 315 FunFam Transcription factor MYB46 71 144 - -
Acco08g0113 315 Gene3D - 14 70 - -
Acco08g0113 315 PANTHER MYB DOMAIN PROTEIN 55 10 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0113 Acco-ChrAcco08 784590 786497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0113 1 310 MYB Transcription Factor Family AT5G12870 47.799 1.49e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco08g0113 Myb_DNA-binding 3.6e-12 CL0123