Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0106 ATGAGTTGGAACACACACATGGAGGTCCACTACAACAATATCAGCTACCCATACAATACAGCAGGAAGTTTTATTGAATATTTTGAAGGTCTAACCTACGAACACGTCAATTTCATTTTTTCTGGTGCTTCACATGCTCAGGAGAGCTTGTACCCATCAACTACAAGCCTATACAAGTTTGGCCCATCTGAGCCTGAGAATGCTTCTTTCTATCGTTACAGTGATGGGTATGAGGTGAATAATCATTACCCACGGATGGATGAGCGCAGAAGGCCTTTAGAGAACACAGCAATATTTAATGAACATGCTGCAGCAGCAAGTACAGAATGGGGTGAAGGTGTAAACACCACTGCACGAGACAATTCTGTTGAATGCCCAAGAAGACATCATAATTCCCATGACTTTCAGGTCACTTGGCAAGACAATATCAATCCCGACAACATGTCCTATGAGGAATTACTCGAGTTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCTCACAAGAACAGATCTCTTTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTTTTACGCAAGAAATCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATACAGGAGAGGAGAAAAACGGATCACCTTACCTTGCAAACATGTCTATCATGCTGGGTGTGCTACACAATGGCTTAGCATCAACAAGGCTTGCCCTATATGTTACACGGAGGTTTTTGCTGATATGTCAAAACGCAAATGA 744 0.4301 MSWNTHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESLYPSTTSLYKFGPSEPENASFYRYSDGYEVNNHYPRMDERRRPLENTAIFNEHAAAASTEWGEGVNTTARDNSVECPRRHHNSHDFQVTWQDNINPDNMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGEKRITLPCKHVYHAGCATQWLSINKACPICYTEVFADMSKRK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0106 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 240 IPR033276 GO:0004842|GO:0016567|GO:0046621
Acco08g0106 247 Pfam Ring finger domain 194 235 IPR001841 -
Acco08g0106 247 ProSiteProfiles Zinc finger RING-type profile. 195 235 IPR001841 -
Acco08g0106 247 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Acco08g0106 247 SUPERFAMILY RING/U-box 191 243 - -
Acco08g0106 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 241 IPR013083 -
Acco08g0106 247 SMART ring_2 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0106 Acco-ChrAcco08 747104 750835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0106 8 244 C3H Transcription Factor Family AT3G63530 44.444 3.05e-69 211