Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0081 ATGCTAGGATTCATTGGCACAGCTATTAATGATGGTCCTGGATGTTTGATGCTGCGGTGTCCTGATCCCTCCTGTGGTGCAGCTGTTGGTCAAGATATGATTGATCGATTAGCATCTCATGAGGATAAGCAGAAGTACTCTCGTTACCTTTGTAGGTCCTATGTTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGATGTGAATATGCAGTTACATTTGATGCTGGTGGTGGAAATTATGATGTTACTTGCCTCTGTTCTTATTGCTTCTGCTGGAATTGCACTGAGGAGGCTCACCGTGCTGTGGATTGTGCCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCGGAGTCTGAGAACATGAACTGGATACTTGCCAACTCAAAGCCCTGTCCCAAGTGCAAGAGACCGATTGAGAAAAACCAAGGGTGCATGCACATGACCTGTACACCTCCATGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGAGCATGGTGAAAGGACTGGTGGCTTCTATGCTTGCAATCGTTACGAGGCAGCTAAACAAGAGGGAGTGCATGATGAAGCTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAAAAATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAGAAAGCTCTTGCTGATCTACATCAAATGCAAACAGTCCAGCTTGAGAAGCTTAGCGACTCACAGTGCCAACCTGAGTCACAGCTAAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAATGGACATATGCTTATGGGTACTATTTACAAGAGCATGACCATGCTAAAAAACAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAGTGTGCTGAAAAGGAATTGCAGCAGTTTCTCAATGCTGATGGCCCATCTAAAGAGTTCAATGACTTCCGAACCAAGCTAGCTGGACTGACCAGTGTGACTAGGAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTGTCCGATGTGGACAGTAATGGAGCTGCTTCCAGCAAAGCAATGAGCTCAAAAAATGCGGCCAGCAGCAGCAAGGGCAGAGGTGGAAGAGGAAAAGGAACCACCCGAACAAGCAGTTCCAACAAAATGAGTGATGATAGTAATTGGCATTGTGAGCACTGTACCTATGCAAATACTATGTCTTTTAATACATGTCAAATGTGCCATCTACAGCGTCGATAG 1281 0.4465 MLGFIGTAINDGPGCLMLRCPDPSCGAAVGQDMIDRLASHEDKQKYSRYLCRSYVEDNKKTKWCPAPGCEYAVTFDAGGGNYDVTCLCSYCFCWNCTEEAHRAVDCATVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSEHGERTGGFYACNRYEAAKQEGVHDEAERRREMAKNSLEKYTHYYERWASNQSSRQKALADLHQMQTVQLEKLSDSQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLQEHDHAKKQFFEYLQGEAESGLERLHQCAEKELQQFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKAMSSKNAASSSKGRGGRGKGTTRTSSSNKMSDDSNWHCEHCTYANTMSFNTCQMCHLQRR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0081 426 ProSitePatterns Zinc finger RanBP2-type signature. 402 421 IPR001876 -
Acco08g0081 426 SMART ibrneu5 110 180 IPR002867 GO:0008270
Acco08g0081 426 SMART ibrneu5 44 106 IPR002867 GO:0008270
Acco08g0081 426 MobiDBLite consensus disorder prediction 360 399 - -
Acco08g0081 426 CDD Rcat_RBR_ARI7-like 129 183 - -
Acco08g0081 426 FunFam RBR-type E3 ubiquitin transferase 107 357 - -
Acco08g0081 426 SUPERFAMILY RING/U-box 45 113 - -
Acco08g0081 426 CDD BRcat_RBR_ANKIB1 51 115 - -
Acco08g0081 426 Pfam IBR domain, a half RING-finger domain 44 106 IPR002867 GO:0008270
Acco08g0081 426 Pfam IBR domain, a half RING-finger domain 123 170 IPR002867 GO:0008270
Acco08g0081 426 Pfam Ariadne domain 193 362 IPR045840 -
Acco08g0081 426 SUPERFAMILY RING/U-box 125 173 - -
Acco08g0081 426 Gene3D - 396 426 - -
Acco08g0081 426 SUPERFAMILY Ran binding protein zinc finger-like 398 425 IPR036443 -
Acco08g0081 426 Gene3D - 104 357 - -
Acco08g0081 426 ProSiteProfiles TRIAD supradomain profile. 1 184 IPR044066 -
Acco08g0081 426 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 272 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0081 Acco-ChrAcco08 558323 564158 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0081 3 400 C3H Transcription Factor Family AT2G31510 79.397 0.0 672