Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0065 ATGGTTGTAGACTGTCCAACGGTCAAATCTCTGAGGGTGAATGCAATGGTCCTCTACTATATATTCGTCTCAGTAGCAAGAGAACTCAGGAGCAGAGTGGCGTGTGACTTCATTCAAACCCAACCTGACACCTCTGGTTTTTCCATCTCCCCATTTATTCAGAGCCCCAGATCTGTCTCCCAGTTTTTCTCATCCACGCTTCTTTTCATCCAACTATTTGCGTCACAATCTTCCTTCTTTACAAATTTGTTCATCTTCCTTCGTCCTCCCTCAACAGCTTCCTCGCGTTCTCGGGGGGCCCTTAACACTATGGACCCCGTTGAGCTGAAGCGCGTTTTCCAGATGTTCGATCGCAACGGGGACGGCCGAATCACTCAGAAGGAGCTCAACGACTCGCTCGAGAGCCTCAGCATCTTCATCCCTCACACGGATTTAAGCCAGATGATCGACAAGATCGACGTCAACGGAGACGGATGCGTCGACATGGAGGAGTTTGGTGAGTTATACAAGGCGATCATGGAGGAACGGAACGAGGAGGAGGACATGAGAGAGGCATTCGCCGTGTTCGACCAAAACAGCGACGGCTTCATCACCGTCGACGAATTGAGATCCGTGTTGTCGTCGCTTGGGTTGAAACAAGGAAGAGCGGTGGAAGATTGCAGGAAGATGATCATGAAGGTGGATGTGGATGGAGACGGGAGAGTCAATTACAGCGAGTTTAAGCAAATGATGAAGGGAGGTGGCTTCGGCGCTCTCGGCTAA 762 0.5052 MVVDCPTVKSLRVNAMVLYYIFVSVARELRSRVACDFIQTQPDTSGFSISPFIQSPRSVSQFFSSTLLFIQLFASQSSFFTNLFIFLRPPSTASSRSRGALNTMDPVELKRVFQMFDRNGDGRITQKELNDSLESLSIFIPHTDLSQMIDKIDVNGDGCVDMEEFGELYKAIMEERNEEEDMREAFAVFDQNSDGFITVDELRSVLSSLGLKQGRAVEDCRKMIMKVDVDGDGRVNYSEFKQMMKGGGFGALG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0065 253 ProSitePatterns EF-hand calcium-binding domain. 228 240 IPR018247 -
Acco08g0065 253 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Acco08g0065 253 SMART efh_1 144 172 IPR002048 GO:0005509
Acco08g0065 253 SMART efh_1 108 136 IPR002048 GO:0005509
Acco08g0065 253 SMART efh_1 181 209 IPR002048 GO:0005509
Acco08g0065 253 SMART efh_1 219 247 IPR002048 GO:0005509
Acco08g0065 253 FunFam calmodulin-like protein 3 175 248 - -
Acco08g0065 253 CDD EFh 181 245 IPR002048 GO:0005509
Acco08g0065 253 Gene3D - 91 177 - -
Acco08g0065 253 Pfam EF-hand domain pair 108 170 IPR002048 GO:0005509
Acco08g0065 253 Pfam EF-hand domain pair 179 245 IPR002048 GO:0005509
Acco08g0065 253 FunFam Calmodulin-like protein 3 104 173 - -
Acco08g0065 253 ProSiteProfiles EF-hand calcium-binding domain profile. 215 250 IPR002048 GO:0005509
Acco08g0065 253 SUPERFAMILY EF-hand 108 246 IPR011992 -
Acco08g0065 253 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Acco08g0065 253 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Acco08g0065 253 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Acco08g0065 253 ProSiteProfiles EF-hand calcium-binding domain profile. 140 175 IPR002048 GO:0005509
Acco08g0065 253 ProSitePatterns EF-hand calcium-binding domain. 153 165 IPR018247 -
Acco08g0065 253 Gene3D - 178 246 - -
Acco08g0065 253 PRINTS Parvalbumin signature 168 186 - -
Acco08g0065 253 PRINTS Parvalbumin signature 190 206 - -
Acco08g0065 253 PRINTS Parvalbumin signature 227 240 - -
Acco08g0065 253 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 180 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0065 Acco-ChrAcco08 483211 484991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0065 104 252 EF-hand Containing Proteins AT1G05990 74.667 7.73e-76 225