Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco08g0037 ATGGAACACCCTTCTTCTCATAAGGGAAAAGACAGTGAATGCTGGAATTCTCCTCGAGCCCAGTTGGAGGGACTGGCACCATTAGATGGTGGCACAAAAAATTTAATTTCAGAGGATATGCTTGGCACCTTCTCTGAGCTCATAAATTTTGATGCTTATGCTGGTTGCTGCAATAGTCCATCAACCACTGACCGGGTTTTATCTAATGGGCTTTCATCATCTGCCTCAGTGCCATATGCGTCACTTGAAGGATTCAATTTAATGGAGGAGAGCTGTGGGTCATTCTTGGCAAGTGATGTTAATAAGAATTACAATGTGATAAGAAGTTTCCCCAACTCTGGAGAGAAAGTTGCATTTCATCAAATGGAGGCCCAACTTGAGTTGTCAGACGATAGAAATGATGCCGGGAACTTAAACTATAAATGTCATCGTAATGAATCTTTTGAAGAACTTGGTAACTTAGCAATGGGCAATCATATAGTGTCTAGGCCACCTGGCTGGTCACTAGATGAGAGAATGCTGTGGGCTTTGTCCCTTTTCAAGGAATCTGTTGGTGGTGGAATCTTGGCACAAGTTTGGGTACCAATAAAGCATGGGGATGAATTCATCTTAACCACAAGTGAGCAACCCTATTTGCTGGACCAAGTGCTTGCAGGTTACCGTGAAGTGTCAAGGACATTTACTTTCTCAGCAGAAGGAAGGCCGGGCTCTATCTTAGGACTTCCTGGTCGTGTCTTTATCTCTAAAGTTCCTGAGTGGACGTCCAATGTTGGTTACTACACTAAGGCTGAATATTTGAGGATTGAGCATGCAATTAATCACAAAGTTTGTGGATTAATTGCAGTTCCAGTGTTTGATCTTTATTCTGAAATGCCATGCTGTGCTGTACTGGAACTAGCCACTACAAAGGAAAAGACTGATTTTGATAGGGAACTGGAAATTCTTTGCCAGGCACTCCAGGTTGTGAATTTAAGGACTACTGAGACTCCCCGACTTCTTCCGCAGAGTCTCTCAAATAAGAAAAGAGCTGCTTTAATGGAGATAGTAAATGTGTTACGGGCTGTGTGTCATGCACATAGTTTGCCTCTGGCATTGACATGGATTCCCTGTCATTACTTGAAGGGAATCGACGATGAAAGTATGAGAGCACTCATTAAGGAGGGTCATTCTAGTTGTAGTGGTAAATATGTATTATGCATCGAAGAATCAGCTTGCTATGTTAATGATAGAAAGATGGAAGGGTTTGTTCATGCATGTGTTGAACATCATCTTGAGGAAGGACAAGGTACAGCTGGCAAAGCTATTCAGTCAAATCAGCCATTCTTCTATCCTGATGTCAAGGCATATGATGTTGGTGAATATCCACTTGTTCAGCATGCACGAAAATACAACTTGAACACTGCGGTTGCTATCAGGCTACGGAGTAACTTCACCAATGATGATGATTACATTTTAGAATTTTTTCTACCTGTCCATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTGGACAACCTCTCAGGTACCATGCAGAGAATTTGTAAGAGTTTAAGGACGGTTACTGATGCCGAATTATCAGGTTCACTGGTAAACCAAAATGAAAAAGTACAGGATTTTTCGCCTATATCCAGGAAAAACTCTCAAACAGAATTGATGGATGGTGGGAAGGACTCAGTCAGTAAGATTTCATTTAAGGCTTGCAACTTGAGAAACAATGGAATTGAAGCTGCTTGTAACCAGAAAATGAATGTGTCAAAAAGGCAGGTTGAAAAAAAGAGAAGCACGGGTGAGAAGAATGTCAGCTTGAGTGTTCTCCAGCAACACTTTTCTGGTAGTCTAAAGGATGCCGCAAAGAGCATTGGTGTTTGTCCTACAACTCTGAAACGTATATGCAGACAACATGGCATTTTAAGATGGCCATCCCGTAAAATAAATAAAGTGAATCGTTCATTAAAGAAAATCCAGACTGTGCTTGATTCTGTTCAGGGAGTGGAAGGAGGGCTAGAGTTCGACCCTTCTTCTGGGGGCTTTGTGGCAGGAGGTTCAATCATTCAAGAATTTGACGCGCATGGTCATCTTTTGTTCTCTGAGAAGAGTATGCCCATAGAAGATCCTGAGTGTGTTGCAAAATATACAGTCTCAGTGCCTACTGTACCTTGTAGTGAAGGAGAGAATTCAGCTATCAAGTTGGAAGATAATGATGTATATTTGGCTGATAACCAGCTTGTGTGCTCACAAGGTGTAGTTACCCCAAACTCTTGTGAGGGAGAATTGAAGAAAGCCAAAGCTTCTTTTGTTGATTGTAGTCAAGATTCAAAATCAATGGCCTTAGATGATAGATCATGCCGGGTGGTCAAGGCTCTGGGATGTCCTGAGCAAGCATGTCTTGGCCCAGTTGCTACAAAAGATGGAAACGCATGGGGTCTGAACAAGTATTGTCAGGGAGCGAAAGATTCTGGTCCTGATATTGTCTCTTGGAGTTCAAGCTCTCTGGTTGCTGATGAGATGGAAAATATTGTGGATGGGGACAATGGGATCGCTGAACACAGCCAACCTACATCTTCAAACGTGACAGACTCATCCAATGGCTCTGGTTCAACGGTCCATGGCAGTTCGTCTTGTGCTCAAAGCTTTGAGAATAAGAAGCATTCCAAAGTCAAATTAACGCTTGCTGACAGTGGATCAAAAATTATTGTGAAAGCCACCTATAAAGACGATACTATACGCATCAAGTTTGATCCATCTGCAGGTTGTTTCCAACTATACGAAGAAGTGGCAACAAGATTCAAATTACAAAATGGGTCATTCCAGCTTAAATATCTTGATGATGACGAGGAGTGGGTAATGTTGGTAAATAACTCAGATTTGCAAGAGTGCGTAAGAGTATTGGAAGATATGGGCACAAGTAGTGTGAAGTTTCTTGTTTGTGATACCTTGCTTCTTGAGCAGCTCCGGTAG 2958 0.4206 MEHPSSHKGKDSECWNSPRAQLEGLAPLDGGTKNLISEDMLGTFSELINFDAYAGCCNSPSTTDRVLSNGLSSSASVPYASLEGFNLMEESCGSFLASDVNKNYNVIRSFPNSGEKVAFHQMEAQLELSDDRNDAGNLNYKCHRNESFEELGNLAMGNHIVSRPPGWSLDERMLWALSLFKESVGGGILAQVWVPIKHGDEFILTTSEQPYLLDQVLAGYREVSRTFTFSAEGRPGSILGLPGRVFISKVPEWTSNVGYYTKAEYLRIEHAINHKVCGLIAVPVFDLYSEMPCCAVLELATTKEKTDFDRELEILCQALQVVNLRTTETPRLLPQSLSNKKRAALMEIVNVLRAVCHAHSLPLALTWIPCHYLKGIDDESMRALIKEGHSSCSGKYVLCIEESACYVNDRKMEGFVHACVEHHLEEGQGTAGKAIQSNQPFFYPDVKAYDVGEYPLVQHARKYNLNTAVAIRLRSNFTNDDDYILEFFLPVHMRGSSEQQLLLDNLSGTMQRICKSLRTVTDAELSGSLVNQNEKVQDFSPISRKNSQTELMDGGKDSVSKISFKACNLRNNGIEAACNQKMNVSKRQVEKKRSTGEKNVSLSVLQQHFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLEFDPSSGGFVAGGSIIQEFDAHGHLLFSEKSMPIEDPECVAKYTVSVPTVPCSEGENSAIKLEDNDVYLADNQLVCSQGVVTPNSCEGELKKAKASFVDCSQDSKSMALDDRSCRVVKALGCPEQACLGPVATKDGNAWGLNKYCQGAKDSGPDIVSWSSSSLVADEMENIVDGDNGIAEHSQPTSSNVTDSSNGSGSTVHGSSSCAQSFENKKHSKVKLTLADSGSKIIVKATYKDDTIRIKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDDEEWVMLVNNSDLQECVRVLEDMGTSSVKFLVCDTLLLEQLR 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco08g0037 985 SMART PB1_new 896 978 IPR000270 GO:0005515
Acco08g0037 985 MobiDBLite consensus disorder prediction 847 874 - -
Acco08g0037 985 MobiDBLite consensus disorder prediction 843 874 - -
Acco08g0037 985 Pfam RWP-RK domain 599 647 IPR003035 -
Acco08g0037 985 Gene3D - 892 977 - -
Acco08g0037 985 ProSiteProfiles RWP-RK domain profile. 580 667 IPR003035 -
Acco08g0037 985 Pfam PB1 domain 899 975 IPR000270 GO:0005515
Acco08g0037 985 SUPERFAMILY CAD & PB1 domains 892 977 - -
Acco08g0037 985 PANTHER PROTEIN NLP8 141 977 IPR045012 GO:0003700
Acco08g0037 985 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco08g0037 Acco-ChrAcco08 359743 364736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco08g0037 1 977 NLP Transcription Factor Family AT2G43500 44.824 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Acco08g0037 PB1 3.7e-15 CL0072