Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g2100 ATGGAGTACAACGTTCCTCCTCCCAGCGACCTTACCTCATCAAGAGCGATATCTTCGAAGGCGAAGAAAAAGAGTGGGAATAAGAAAAGCAAAGGAGGCGTGAAGCTTTCAACCGATCCACAGAGCGTGGCAGCTAGAGAACGAAGGCATCGAATCAGCGATCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACGGTGTCAATGTTGGAGGAAGCTATTCATTACGTGAAGTTTCTGAAAACTCAGATTTGGCTTCACCAAACCATGATTAACTCTATTGACGATGACTACCTTTCATTTCCCAACAATGAACAGTTTCCTTCTCTGCAACAAAACGCGTCATCTTCTTCTTCTGTGGGCTCTGTGCAGAATTTGACACACATACCTCTGGAACAGCATTGCTGCTTCCAAAATGAAGTTGCAACAATATTGGACGCCAATATGAACTATTGGCCAGCTTAG 480 0.4542 MEYNVPPPSDLTSSRAISSKAKKKSGNKKSKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINSIDDDYLSFPNNEQFPSLQQNASSSSSVGSVQNLTHIPLEQHCCFQNEVATILDANMNYWPA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g2100 159 CDD bHLH_AtIND_like 37 96 - -
Acco07g2100 159 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 134 IPR045843 GO:0003700|GO:0006355
Acco07g2100 159 MobiDBLite consensus disorder prediction 1 48 - -
Acco07g2100 159 Gene3D - 41 94 IPR036638 GO:0046983
Acco07g2100 159 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Acco07g2100 159 FunFam Transcription factor LAX PANICLE 39 102 - -
Acco07g2100 159 Pfam Helix-loop-helix DNA-binding domain 46 85 IPR011598 GO:0046983
Acco07g2100 159 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 95 IPR036638 GO:0046983
Acco07g2100 159 SMART finulus 42 91 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g2100 Acco-ChrAcco07 38822362 38822841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g2100 28 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.899 1.56e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco07g2100 HLH 4.9e-08 No_clan