Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g2039 ATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGACTTGTTCGTGCTTTAACTCATGATGTTGATGAATTTTATGGGGTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCCGCCAGCAGAGGAAGTTCCACCTGAGATTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGCAACGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGCGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAGACGGTTATTCAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTAACTGAGAGGAAACCGTTAAAGGACAAGCCCACTGTGGACAGTAGTAGCAAGCCTCGAGGCGGCTCCAAGAGATCAAGTGACGGGCAAGTGAAAAGCAACCCAAAGTCTTCCGATGAAGGTAACGAGGAGGATGAAGATGATCTTAGCGATACCCTTTGTGGTACCTGTGGTGGAAATTATAATGCAGATGAATTTTGGATTGGCTGCGATATCTGCGAGAAATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGTAGCATGAGGCGAGGTAGGCCTTAG 714 0.465 MASSPRTVEEIFKDYSARRAGLVRALTHDVDEFYGVCDPDKENLCLYGHPNETWEVTPPAEEVPPEIPEPALGINFARDGMQRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERRRLFSLINDLPTVFEVVTERKPLKDKPTVDSSSKPRGGSKRSSDGQVKSNPKSSDEGNEEDEDDLSDTLCGTCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g2039 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Acco07g2039 237 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
Acco07g2039 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Acco07g2039 237 SMART PHD_3 183 231 IPR001965 -
Acco07g2039 237 CDD PHD_AL_plant 183 233 IPR044104 -
Acco07g2039 237 MobiDBLite consensus disorder prediction 146 166 - -
Acco07g2039 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Acco07g2039 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Acco07g2039 237 FunFam PHD finger alfin-like protein 176 232 - -
Acco07g2039 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Acco07g2039 237 MobiDBLite consensus disorder prediction 138 178 - -
Acco07g2039 237 Pfam PHD-finger 184 231 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g2039 Acco-ChrAcco07 38105795 38108592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g2039 2 236 Alfin-like Transcription Factor Family AT5G05610 74.153 2.25e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Acco07g2039 Alfin 7.8e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco09g0229 09 2643479 2647929 Acco07g2039 07 38105795 38108592 CCT