Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g2024 ATGAACCATCAGATTAAGCCAATGGCTAAGATTTCTCTAAATGCATCTTGTCCTTTTCCTCCTATATTTTCACTCTTTTTCTCGTTCTTCTCTCTCATCTTTTCCAAGACTTCAACAATGAAGACTGGCAAAGGGAAGGGAGCAGTAAAGAACTCCAAGGAATCATTGAAGCCTGTCGATGACAGAAGGGTTGGAAAGCGAAAGGCTGCAGCTAAACCTGACAAAAGTAATAAACGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAATGTGAAGGCAGTATCAGCTGTTGGGAAAGCTGGAGGACAGAAATGGAAATCCATGTCCGAGGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAATCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGTACAGCGGATGATGGAGGTGATGAATCAGACAGGTCCAAATCTGAAATTAACGATGAAGATGAAGAGGAGGCTCACCAAGAAGAGGAGGAGGAGGAGGAGGATGAAGAGGACGACGACGATGAGGAGGACGATGACTGA 630 0.4349 MNHQIKPMAKISLNASCPFPPIFSLFFSFFSLIFSKTSTMKTGKGKGAVKNSKESLKPVDDRRVGKRKAAAKPDKSNKRQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAGGQKWKSMSEAEKAPYEAKAAKRKSEYEKLMNAYNKKQASTADDGGDESDRSKSEINDEDEEEAHQEEEEEEEDEEDDDDEEDDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g2024 209 CDD HMG-box_AtHMGB1-like 91 151 - -
Acco07g2024 209 MobiDBLite consensus disorder prediction 120 209 - -
Acco07g2024 209 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 90 159 IPR009071 -
Acco07g2024 209 MobiDBLite consensus disorder prediction 134 155 - -
Acco07g2024 209 MobiDBLite consensus disorder prediction 178 209 - -
Acco07g2024 209 Pfam HMG (high mobility group) box 90 159 IPR009071 -
Acco07g2024 209 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 42 193 IPR031061 -
Acco07g2024 209 MobiDBLite consensus disorder prediction 47 91 - -
Acco07g2024 209 Gene3D High mobility group box domain 73 175 IPR036910 -
Acco07g2024 209 MobiDBLite consensus disorder prediction 40 94 - -
Acco07g2024 209 Coils Coil 180 202 - -
Acco07g2024 209 SUPERFAMILY HMG-box 76 160 IPR036910 -
Acco07g2024 209 SMART hmgende2 89 160 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g2024 Acco-ChrAcco07 37923154 37926444 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Acco07g2024 HMG_box 4.6e-24 CL0114