LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g2014	ATGATTAGAAATTGCTTCGGTGCCTTGAATTGGTGTACACCTAGATGGAGGAATTATTCTGATGATCAGTCACGCGAACAAGTGATATCAACCAGAACGTTTAGTTATAATTCTTTGAGATCAGCAACAGAAGACTTTCATCCATCCAACAGAATTGGTCAAGGAGGTTATGGTGTTGTCTACAAGGGAGTTTTACGGGATGGAACTCAAGTTGCTATCAAGTCTCTTTCTGTAGGGTCTAAGCAAGGAGCAAGAGAATTTATGACAGAAATTGTTATGATATCAAACATAAGACATCCAAACCTGGTGCAACTAATCGGCTGCTGTATAGAGGACAACCATCGCATATTGGTCTACGAATTTCTGGAAAACAGTTGCCTTGCAAGCTCTTTGCTTGGTTCCAAAAGTAAATGTGTTGCTCTAGATTGGCCAAAAAGGGCTTCCATTTGCCTTGGTACTGCTTCTGCTCTTGCATTTCTTCATGACGACGTTCAGCCAAATATTGTTCATAGAGATATAAAGGCTAGCAACATACTCCTTGATGGAAACTTCAATCCTAAAATAGGGGACTTTGGCCTCGCGAAACTTTTTCCTGACAATGTCACCCATCTGAGTACACGAGTGGCTGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGTCAGCTTACAAAAAAGGCAGATGTGTACAGTTTCGGCGTTCTCTTGCTCGAAGTAATCAGTGGTAGAAGTAGCAGCAAAGCTGCCTTTGGAGATAAGCTACTGGTTCTTGTGGAATGGACATGGAAGCTGAAAGAAGAAAATAGGCTTCTGGACATTGTTGATCGAGAACTAACTTCGTACGATGAGACTGAGGTCATGCGTTTCATTAAGGTTGCTCTGTTCTGTACCCAAGCAGCTGCTCATCATAGACCGACCATGAAGCAAGTAGTGGAAATGCTGTCCAAGGAAGTTCACCTCAATGACACGGCTTTGACAGAGCCCGGAGTTCATAGATGGCGTCGTGCCTCAAGAAATGCCGTAAATTTTTTGGGTGAGACATCAACTTCTCAGGTGAACAAGCCTAATAGAAGACCTGAAAATTCACACATAACCTCTGAGCAGTTAGGTGATCCTGATATTGTGACAGACATACTTCCAAGATGA	1152	0.4271	MIRNCFGALNWCTPRWRNYSDDQSREQVISTRTFSYNSLRSATEDFHPSNRIGQGGYGVVYKGVLRDGTQVAIKSLSVGSKQGAREFMTEIVMISNIRHPNLVQLIGCCIEDNHRILVYEFLENSCLASSLLGSKSKCVALDWPKRASICLGTASALAFLHDDVQPNIVHRDIKASNILLDGNFNPKIGDFGLAKLFPDNVTHLSTRVAGTVGYLAPEYALLGQLTKKADVYSFGVLLLEVISGRSSSKAAFGDKLLVLVEWTWKLKEENRLLDIVDRELTSYDETEVMRFIKVALFCTQAAAHHRPTMKQVVEMLSKEVHLNDTALTEPGVHRWRRASRNAVNFLGETSTSQVNKPNRRPENSHITSEQLGDPDIVTDILPR	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g2014	383	ProSitePatterns	Protein kinases ATP-binding region signature.	52	74	IPR017441	GO:0005524
	Acco07g2014	383	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Acco07g2014	383	Gene3D	Phosphorylase Kinase; domain 1	12	121	-	-
	Acco07g2014	383	SMART	serkin_6	46	316	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g2014	383	ProSiteProfiles	Protein kinase domain profile.	46	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g2014	383	MobiDBLite	consensus disorder prediction	347	370	-	-
	Acco07g2014	383	SUPERFAMILY	Protein kinase-like (PK-like)	23	316	IPR011009	-
	Acco07g2014	383	CDD	STKc_IRAK	52	318	-	-
	Acco07g2014	383	Gene3D	Transferase(Phosphotransferase) domain 1	123	330	-	-
	Acco07g2014	383	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	122	328	-	-
	Acco07g2014	383	FunFam	cold-responsive protein kinase 1	17	121	-	-
	Acco07g2014	383	Pfam	Protein tyrosine and serine/threonine kinase	49	316	IPR001245	GO:0004672\|GO:0006468
	Acco07g2014	383	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	30	341	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g2014	Acco-ChrAcco07	37804164	37807433	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g2014	15	331	Receptor kinase-like Gene Family	AT1G56120	51.090	4.05e-109	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco07g2014		PK_Tyr_Ser-Thr	7.3e-45	CL0016