Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1787 ATGATGGAGGTTTCTCTGAAATGGCCATTCATCGTTTCCGTTCTGGCTATGGCGCTGCTTTTATCTAGCGCCAAGCCATTGAATGTGGATGATCATGAGAAAGGCCGTTTTGTACAGTCAAGGAATGTAGAAACAGAGAAGTTGCAGAGTTTGAAAAATTCATCAATGGCGGACAGGTTGGATGATGCTCTGAATGAACACGCAGTTGATGATCCAGAGGAGATAGCTTCCATGGTTGATATGAGTATACGCAATCATACTGAAAGAAGGAATCTGGGTTTCTTCTCATGTGTGACTGGAAATCCAATTGATGATTGCTGGCGCTGTGACAAATTATGGCACAGACGGCGAAAGCGTTTGGCCAACTGTGGAATTGGCTTTGGACGTAATGCCATTGGTGGCCGTGATGGAAGGTTCTATATTGTGACTGATCCAAGAGACGACGACCCTATCAACCCAAGACCAGGTACACTTCGCCACGCGGTTATCCAAGACAGACCCTTGTGGATTGTGTTCAAGAGAGACATGGTTATAACTTTAAAGCAAGAGCTTATAATGAATAGCTTCAAGACCATTGATGGTCGTGGAGTGAATGTGCACATTGCTTATGGGGCTTGCATTACTATTCAGTTCATAACCAATGTTATCATTCATGGTTTACATATCCATGACTGTAAAAGCACTGGTAATGCTTTGGTTCGTAGCTCACCAACTCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCCATCTTTGGTTCAAGTCACATTTGGATTGACCATAACTCACTGTCTAATTGCGCTGATGGTCTTATTGATGCTATTATGGGCTCTACTGCTATTACCATTTCCAGCAATTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGATTCATATGTAAGAGATAAGCAGATGCAAGTAACCATTGCCTACAATCATTTTGGGGAGGGTCTTATCCAGAGAATGCCGAGGTGCAGGCATGGGTATTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACGATTAACAGTCAAGGCAACCGATACCTTGCCCCTCGAGACCGTTTTGCTAAGGAGGTGACAAAGAGAGTGGAGACAGACCCTAGGATATGGAAGCATTGGAATTGGAGGTCAATGGGAGACCTTATGTTAAATGGAGCCTATTTCACTTCATCAGGAGCAGCTACTGCAGCAAGCTATGCCAGAGCCTCCAGTTTAGGGGCCAAGTCATCTTCCATGGTTGGTGTCCTTACTTCTGGGGCAGGTGTCCTTAGCTGCCGCAGGGGGTTCACCTGTTAA 1350 0.4504 MMEVSLKWPFIVSVLAMALLLSSAKPLNVDDHEKGRFVQSRNVETEKLQSLKNSSMADRLDDALNEHAVDDPEEIASMVDMSIRNHTERRNLGFFSCVTGNPIDDCWRCDKLWHRRRKRLANCGIGFGRNAIGGRDGRFYIVTDPRDDDPINPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKSTGNALVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISSNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPRDRFAKEVTKRVETDPRIWKHWNWRSMGDLMLNGAYFTSSGAATAASYARASSLGAKSSSMVGVLTSGAGVLSCRRGFTC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1787 449 Pfam Pectate lyase 184 364 IPR002022 -
Acco07g1787 449 PANTHER PECTATE LYASE 18-RELATED 69 446 IPR045032 GO:0030570
Acco07g1787 449 Gene3D - 100 442 IPR012334 -
Acco07g1787 449 SMART amb_all 175 372 IPR002022 -
Acco07g1787 449 FunFam Pectate lyase 100 442 - -
Acco07g1787 449 SUPERFAMILY Pectin lyase-like 78 443 IPR011050 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Acco07g1787 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1787 Acco-ChrAcco07 34719620 34724197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1787 40 449 Polysaccharide Lyase AT4G13710 77.990 0.0 688