LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g1771	ATGTTGAGCACCTTATCCAAAAATACCAAAATGCAAAAACAAGAAGGCCAAAAGAGTAGAATGAAAGAGATTCTTGTTGTTGCTCTTATCCTGTTGCAGACTTGTTCCCAAGTTGCAACTTCTGGTTCACATGTTGAGTACCTTCCTGGTTTTGAAGGCCCTCTTCCTTTTCATCTTGAAACTGGGTATGTGGGAGTGGGAAACTCAGCAGCAGAAGAAGGAGTAGGAGAAGTGTTCTATTACTTTATTGAGTCAGAGAACAATCCAGAAGAGGACCCTCTTATGCTTTGGCTCACAGGTCCAATCGCTTTCAAAGTTGAGAAATACAATGGTAGCCTCCCAAATTTGGTTTTGAGGCCACAAGCCTGGACAAAGTGGCTAATTGATCACCCAAAATTTCGAACAAATCAAGTTTATATTGGTGGTGACTCATATTCTGGTCTTCCGATTCCTGCTATTGTTCAAGAAATTTCAAATGGAAATGAAGAAGGAATCCAGCCATGGATAAATCTCCAGGGATATGTGCTCGGAAATCCCGTGACAACATGGGAAGAAGAAAATTATTTACCTACATTTGCTCATGGAATGGCACTTATTTCCGATGAACTTTATATGCTCATGTCAGGACTTGATGGATTTCACACTTTGGAACCCAAATGTCAGTTGGCTTCGCCTAGGCCTCATGGATTTTGGGGTAGAAGATCTCTCGTCAACAAAATTCGAAGGCCTCTTAGTGCTCGCCTTGCGAGGCCTCCTTTAAATTGCAAGAGTTATGTATATTTCTTCAGCTACGATTGGCTTCGGGATGACAAAGTTCAGGAGGCACTAAATATTCGAAAGGGTACCATAAGGAATTGGCAACGTTGTAACAACTTTGACTATGATTATACCATCAGCAGTGCGTTTCCATATCACGTAAATCTAAGCCAAAAAGGCTATCGATCTTTGATTTACAGTGGAGATCATGACCCAGGAGTTCCATTTTTGTCGACTCAAGCATGGATCAGAGATTTAAACTACTCCATTGTTGAAGAATGGAGACCTTGGCTTGTCAATGGCCAGATATACGAGAAGGGTGCAGGACATATAGCTCCTGAATACAAATCTGAAGAATGTTTTGAGATGTTCATTCGGTGGATATCTAACAAGCCTTTGTAA	1158	0.4119	MLSTLSKNTKMQKQEGQKSRMKEILVVALILLQTCSQVATSGSHVEYLPGFEGPLPFHLETGYVGVGNSAAEEGVGEVFYYFIESENNPEEDPLMLWLTGPIAFKVEKYNGSLPNLVLRPQAWTKWLIDHPKFRTNQVYIGGDSYSGLPIPAIVQEISNGNEEGIQPWINLQGYVLGNPVTTWEEENYLPTFAHGMALISDELYMLMSGLDGFHTLEPKCQLASPRPHGFWGRRSLVNKIRRPLSARLARPPLNCKSYVYFFSYDWLRDDKVQEALNIRKGTIRNWQRCNNFDYDYTISSAFPYHVNLSQKGYRSLIYSGDHDPGVPFLSTQAWIRDLNYSIVEEWRPWLVNGQIYEKGAGHIAPEYKSEECFEMFIRWISNKPL	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g1771	385	PRINTS	Carboxypeptidase C serine protease (S10) family signature	352	365	IPR001563	GO:0004185\|GO:0006508
	Acco07g1771	385	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	151	IPR001563	GO:0004185\|GO:0006508
	Acco07g1771	385	Pfam	Serine carboxypeptidase	124	382	IPR001563	GO:0004185\|GO:0006508
	Acco07g1771	385	Pfam	Serine carboxypeptidase	49	100	IPR001563	GO:0004185\|GO:0006508
	Acco07g1771	385	Gene3D	alpha/beta hydrolase	123	385	IPR029058	-
	Acco07g1771	385	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	43	124	IPR001563	GO:0004185\|GO:0006508
	Acco07g1771	385	SUPERFAMILY	alpha/beta-Hydrolases	45	384	IPR029058	-
	Acco07g1771	385	Gene3D	alpha/beta hydrolase	39	122	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g1771	Acco-ChrAcco07	34475093	34479371	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g1771	39	79	Calmodulin-binding Proteins	AT2G22960	59.524	8.89e-08	50.1