Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1731 ATGAAGCGCCCGATCGATGACATCGTTGCGCCTTTGGCTTCTTCCACTTCTTCCTCTGCCGCTGCTGCACCTCCAAAGCCGGTGTTCTTAACGAAAGCTCAACGTGAACAATTGGCTCTTCAGCGACGCCAAGATGAAATCGCTGAACAAAGACGCCGTCAGGAACAGCTACATTCTCGGAACCGCCCATCCGACCCAAACTCCGATTCTAAACCCTCTGATTCCGATCGACGCGACCGTGACCGTGATCGTGACCGTGACCGCGATCGGGACCGTGATAGAGAGCGAGAGCGAGAGCGGGACCGTGAGCGTGAACGAGAGCGAGAGCGAGATAGGGCACGGGATCGGGACCGTGAAACAGAGCGCAGGAATCGCGAGAGGGAGCGTGAAGAAGAAGCTAAAGCCCGCGAGCGTGCTCGGCTGGAGAAATTGCAAGAGCGTGAGCGGGAGAAAGAGCTTGAAGCTATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCAAAGAAGCGGGTTATCAAACCCAGTGAGAAGTTTAGGTTCTCTTTCGATTGGGAGAATACGGAGGATACTTCTCGTGACATGAATATTCTTTACCAGAATCCTCACGAAGCGCAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGAATGGACCGGCGTGAGCAGAAGAAACTTGCTGCTAAGAATGAGAAAGAGATGCGCGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGCTGTTGCACAACGGCGAAAGGAGGCTGCTGCTGAACTCTATGACACCTTTGACATGAGAGTTGATCGCCATTGGAGCCAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAGAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTATTGAAGGCCGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCTATTCAGATGGCTGCCATTCCTCTTGGTCTTCAGCAGCGTGATGTCATTGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGTCCCTATGCTGTCGTCATGGCGCCTACACGTGAACTTGCTCAGCAGATTGAGGATGAGACCGTGAAGTTTGCTCAATTTCTTGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAGGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGGTTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGTAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAAAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAACGGCTTGCTAGGAAATACTTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTAATTATGATGAAGGAATCTGAAAAATTTTTCAAACTGCAACGGCTGCTTGATGAACTTAACGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGATAAGGAAGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGCAAGACAGGTGTTGCTACAACGTTCCTGACTCTTCAAGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATACAGAGTAATAGTCCCGTCCCTCCTGAATTGGCCAGACACGAGGCCTCAAAATTCAAGCCAGGAGGTATTCCTGATAGACCACCTAGACGAAATGACACTGTATTTGCACACTGA 2181 0.4833 MKRPIDDIVAPLASSTSSSAAAAPPKPVFLTKAQREQLALQRRQDEIAEQRRRQEQLHSRNRPSDPNSDSKPSDSDRRDRDRDRDRDRDRDRDRERERERDRERERERERDRARDRDRETERRNREREREEEAKARERARLEKLQEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAAELYDTFDMRVDRHWSQKKLEEMTERDWRIFREDFNISYKGSRIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQFLGIKVVSIVGGQSIEEQGFRIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGGIPDRPPRRNDTVFAH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1731 726 SMART ultradead3 325 547 IPR014001 -
Acco07g1731 726 Gene3D - 267 536 IPR027417 -
Acco07g1731 726 CDD SF2_C_DEAD 544 673 - -
Acco07g1731 726 MobiDBLite consensus disorder prediction 38 151 - -
Acco07g1731 726 MobiDBLite consensus disorder prediction 224 249 - -
Acco07g1731 726 CDD DEADc_DDX23 317 533 - -
Acco07g1731 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 532 IPR014001 -
Acco07g1731 726 Pfam Helicase conserved C-terminal domain 559 664 IPR001650 -
Acco07g1731 726 Pfam DEAD/DEAH box helicase 331 521 IPR011545 GO:0003676|GO:0005524
Acco07g1731 726 Coils Coil 218 244 - -
Acco07g1731 726 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 461 469 IPR000629 -
Acco07g1731 726 MobiDBLite consensus disorder prediction 1 151 - -
Acco07g1731 726 Coils Coil 33 60 - -
Acco07g1731 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 685 IPR027417 -
Acco07g1731 726 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 306 334 IPR014014 GO:0003724
Acco07g1731 726 FunFam probable ATP-dependent RNA helicase DDX23 537 725 - -
Acco07g1731 726 SMART helicmild6 583 664 IPR001650 -
Acco07g1731 726 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 238 703 - -
Acco07g1731 726 FunFam probable ATP-dependent RNA helicase DDX23 267 536 - -
Acco07g1731 726 Coils Coil 96 156 - -
Acco07g1731 726 MobiDBLite consensus disorder prediction 701 726 - -
Acco07g1731 726 Gene3D - 537 721 IPR027417 -
Acco07g1731 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 703 IPR001650 -
Acco07g1731 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 485 IPR027417 -
Acco07g1731 726 MobiDBLite consensus disorder prediction 694 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1731 Acco-ChrAcco07 33692394 33694574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1731 307 700 Eukaryotic Initiation Factors Gene Family AT1G72730 32.658 1.92e-60 207