Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1656 ATGGCGAAGCCGGGAGCGTTGGAATCTGATCCAACGGTGACGGCGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCAATTGTTGAAGATGAAGATCATCATTACGGCATCGAGACCATCGATACGACAATGGAGACGCTGTCGTTGCTGAAGGAGCTGAAGCTCAGCAAGAGATCATCGACGGTGACGACGACGGCGGCGCCGTCGTCTTCGTCACTGTCTTTGAAGCTCCGCCATAAAACCAGCTTGAATTGGCCGGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGACAGAACCTTCATTCAAAAATGGCTGAAAGCCGGGAACCGGACATGTCCTCGGACACAGCAAGTCCTCTCACACACAGTTCTCACTCCAAATTATCTAATAAGCGAAATGATTGAGCAATGGTGTAGAAGCCAAGGGATTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGCAATCCTAGAACCAGACCATGGCCATTTTCTTTCTTTGCTTGAGAAAGTGTCTTCATCAGCACTTTCTGAACAGAAAGCTGCCGCGAAGGAGCTCAGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTCTTCAGTGAGTTTCCAGACGCCATTCCCAAATTGCTCAAACCAATCTGTGGGAGTCACTCTCTGGGTAATGTCCACCCTGACCTCCAAGAAGATGTCATCACAACAATCCTCAATATCTCCATCCATGACAACAACAAGAAGCTTGTAGCAGACACTCCAATGGTAATCCCTCTCCTAATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAACGCCGCAGCCGCCCTTTTCACTTTATCGGCTCTAGACTTAAACAAGGAGCTCATTGGCAAATCTGGAGCCTTGAAGCCTTTGATTGATCTCTTAGAAGAAGGACATCCCTTAGCCATGAAAGACGTTGCATCAGCAATTTTCACCTTATGTGTCCTCCAAGAGAACAAGGCAAGAGCTGTGAAGGACGGCATGGTGAAGGTGATCGTAAAGAAGATCGTTGACCGGGTCTATGTAGACGAGCTACTAGCCATCCTCGCGCTGCTCTCTAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTAGCTAGCTTGCTGAGCTTAATCAGAGAGACCAATTGTGAAAGAAACAAAGAGAACTGCATAGCAATACTCCTGACTATATGTCTTTTTGACAGAACCAGGTTGAAGGAGATGAAGGAAGAAGAAAACAGACATAGAACAATCTCAGAGCTTGCACAGAATGGAACTTCAAGGGCTAAGAGAAAGGCTGCTGCAATTCTTGAGAGACTCAACCGGGTTGTTAATATTACACACACTGCTTAA 1425 0.4639 MAKPGALESDPTVTAKAMELKKELQRLVKSIVEDEDHHYGIETIDTTMETLSLLKELKLSKRSSTVTTTAAPSSSSLSLKLRHKTSLNWPEEFKCPLSKQLMRDPVIVASGQTYDRTFIQKWLKAGNRTCPRTQQVLSHTVLTPNYLISEMIEQWCRSQGIEFSNHVHYINEEAILEPDHGHFLSLLEKVSSSALSEQKAAAKELRILTKKMPSFRVFFSEFPDAIPKLLKPICGSHSLGNVHPDLQEDVITTILNISIHDNNKKLVADTPMVIPLLMRALRSGTIATRSNAAAALFTLSALDLNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGMVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVASLLSLIRETNCERNKENCIAILLTICLFDRTRLKEMKEEENRHRTISELAQNGTSRAKRKAAAILERLNRVVNITHTA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1656 474 SUPERFAMILY ARM repeat 181 464 IPR016024 -
Acco07g1656 474 Gene3D - 368 467 IPR011989 -
Acco07g1656 474 SMART Ubox_2 92 155 IPR003613 GO:0004842|GO:0016567
Acco07g1656 474 SMART arm_5 302 342 IPR000225 GO:0005515
Acco07g1656 474 SMART arm_5 260 301 IPR000225 GO:0005515
Acco07g1656 474 SMART arm_5 382 423 IPR000225 GO:0005515
Acco07g1656 474 FunFam RING-type E3 ubiquitin transferase 88 162 - -
Acco07g1656 474 PANTHER U BOX DOMAIN-CONTAINING 18 464 - -
Acco07g1656 474 Gene3D - 223 367 IPR011989 -
Acco07g1656 474 Pfam U-box domain 90 159 IPR003613 GO:0004842|GO:0016567
Acco07g1656 474 SUPERFAMILY RING/U-box 86 165 - -
Acco07g1656 474 ProSiteProfiles U-box domain profile. 88 162 IPR003613 GO:0004842|GO:0016567
Acco07g1656 474 CDD RING-Ubox_PUB 90 142 IPR045210 -
Acco07g1656 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 162 IPR013083 -
Acco07g1656 474 FunFam RING-type E3 ubiquitin transferase 173 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1656 Acco-ChrAcco07 32587132 32590816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1656 151 474 U-box Gene Family AT3G07360 60.606 5.11e-133 385