Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1561 ATGGCTTCACAATTCCTAAGAAGAGATAAAAGGAAGGCTTCTTTCTTCAAAGTCCTTATCAATGATTTCTCTACTCGCTTGCAAATCCCACCATCTTTTATTAAGGAGTTTCGGAAAGACGGCGTGCCAAAGGGAACAACACTTGAGACTTATAATTGTAAATATTGGGAAGTTGGAGTGGAAAAGATGGGAAACAAATTTTATTTTAATAATGGCTGGGATAAATTTGTGCATGATAATAGTCTGGAAAATGGAGATTTCTTGGTGTTAAAGTATTTCGCAGATTATTCGAAGTTTAAGGTAAAAATCTACGGAAAATCTTGCTGTGAGAAGCAATTGAACTTGGTTACTGGGGGGAGATGTTGTGAACCTCTTAGTGGTAAACAAGTCCAGAGGAATGAACAAGCACGAAGAAAAAGAGAGAGGCGCAATGAAGAAAATGATGCTAATGTCAACAAAGATCGAGAATCCAAAGCTTTCAAAAGCGACGTCATTAATCTTGAATCTGATGGCTCTTACTCATCTTTTGATGATGACGATGATGAAGAACAAGAAATTGGAGAGACCCGGAAAAGAAAAGCAAAAAATGTTGAGTTCAAATGGAATGAAAAATATTGTAGAATGCCTCCAGACTATCATAACTACATCGAATTCGAATCTGAAAATAAGTATTTTGATCTCCAACTCAAGCATTCAAGTACCAACCATTATCTGCATATACCCACAGATTTTTTCGAGGAACATATGAAGAAAAACGAAAGGATCAAGTTAGAGGTATCTGAGAAAACATGGAAAATGGAGATTCATGTGTACGAAGATAAACGACGTAAGAAACGAATAAAGGATGCCAGAGTGACTAACGGATGGAAGAGATTGGTGAAAGAACATAATTTGAAAATGGGAGATATATGCGTCTTTGAAATGATTAGTAAATGTTATGATTATTCTGTGTTTCATGTTCATGTTTATAGGTGGGATCATCAAAAAGCAGAGTTTTCCAAGATAATTTAG 1011 0.3571 MASQFLRRDKRKASFFKVLINDFSTRLQIPPSFIKEFRKDGVPKGTTLETYNCKYWEVGVEKMGNKFYFNNGWDKFVHDNSLENGDFLVLKYFADYSKFKVKIYGKSCCEKQLNLVTGGRCCEPLSGKQVQRNEQARRKRERRNEENDANVNKDRESKAFKSDVINLESDGSYSSFDDDDDEEQEIGETRKRKAKNVEFKWNEKYCRMPPDYHNYIEFESENKYFDLQLKHSSTNHYLHIPTDFFEEHMKKNERIKLEVSEKTWKMEIHVYEDKRRKKRIKDARVTNGWKRLVKEHNLKMGDICVFEMISKCYDYSVFHVHVYRWDHQKAEFSKII 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1561 336 Pfam B3 DNA binding domain 230 311 IPR003340 GO:0003677
Acco07g1561 336 Pfam B3 DNA binding domain 15 105 IPR003340 GO:0003677
Acco07g1561 336 MobiDBLite consensus disorder prediction 170 189 - -
Acco07g1561 336 SUPERFAMILY DNA-binding pseudobarrel domain 12 113 IPR015300 -
Acco07g1561 336 CDD B3_DNA 14 104 IPR003340 GO:0003677
Acco07g1561 336 Gene3D - 6 109 IPR015300 -
Acco07g1561 336 Gene3D - 212 327 IPR015300 -
Acco07g1561 336 CDD B3_DNA 223 324 IPR003340 GO:0003677
Acco07g1561 336 SUPERFAMILY DNA-binding pseudobarrel domain 218 326 IPR015300 -
Acco07g1561 336 MobiDBLite consensus disorder prediction 132 155 - -
Acco07g1561 336 PANTHER B3 DOMAIN-CONTAINING 9 318 - -
Acco07g1561 336 ProSiteProfiles B3 DNA-binding domain profile. 223 326 IPR003340 GO:0003677
Acco07g1561 336 ProSiteProfiles B3 DNA-binding domain profile. 12 107 IPR003340 GO:0003677
Acco07g1561 336 SMART B3_2 225 326 IPR003340 GO:0003677
Acco07g1561 336 SMART B3_2 15 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1561 Acco-ChrAcco07 30407594 30409111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1561 26 324 B3 DNA Binding Superfamily AT3G18990 24.633 3.57e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco07g1561 B3 2e-13 CL0405