Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1560 ATGGTAGTCGCTAGAGATAGTGTCTCTGTGGAGGAGACTGACCTTGAAGGAGGAGAGTCATTATTCATCCCCGTAATTGAAACTTTCCAGCTTTCAAATCTCACTGTGATCATCATCTTCTTACTCTTCTCGCCAAAAGCTTCCATGGATAATGATAGAGCTTCACAATCCCAAAGAAAACGCAAGAACCCTTCCTTCTTCAAGGTTCTAATCCAAGATTTCTCTACCCGCCTGCAAATCCCACCAGCTTTTAACAAGGTCTTTGGTAAAGAGAAGCCAAAGAAAGCGATTCTTGAGACTTATTCTGGAAAATCTGTAGAAGTTGAGGTTGAAAAGCATGATAATCGATTTTGTTTCTGTAAGGGATGGAGTAAATTTGTGGAGAATAATAAATTAGAGAATGGAGATTTTTTAGTGTTTAAATACTTGTCAGATTGTTCCAAGTTTAAGGTCAAAATCTATGGCAAAACATGCTGCGAGAAGGAACATTATTATCCTTCAGAAACTGGGAAAAACGAAGATGAGAGAGATGGACTAAAAAGAAAGAGGGAAGAAGAAAAAGAACAAGATAATAATGTGAAGGAAGATGGATCCTTTAAAGCTGCAAAAAGAATTGAGACAGATGCTGATTCTGATTTTGGAGAGGAAGCTTCAGAAGATGAACCGATCAATCTTGATTCTGATACTGATTCTAGTTCTTCTCATCCTATTGACGAAGAAGAAATCGGTAATTCGAAGCAACAATCGAGTGAAGAGAAGGAGAATGAAGAGCCCAAAAGTTTGCATAGTGATAACCAAATAGAATTGAAACCTGAGAGGCCTTGCTTCCGAGTCAAACTCAAATCTTCAAATATCAGTAGCTATCTGAATATACCATTAAGCTTTTCACGGAAATATTTAAAGGAGAGTCAAAGCCAAGAGATCAGACTTAAGACGCCCAACAAGAAAGTATGGGAATTGGGTCTTCTTGTGTTGTGGGGAGTTGTTGATAAGAAAAAGGAAATGGCTGGAGCAAGACTGAGTCAAGGATGGAGGAACTTGGTCGCAGAATATCATCTCCAAATGGGAGATGTCTGCATCTTTGAATTGATCCAACCAACTCATAAGCTTGTCTTTCATCTTCATGTCTTTCGACGGGATGCTCAAAACAAGAAGTTTATTCGCTTACTTTAG 1173 0.3862 MVVARDSVSVEETDLEGGESLFIPVIETFQLSNLTVIIIFLLFSPKASMDNDRASQSQRKRKNPSFFKVLIQDFSTRLQIPPAFNKVFGKEKPKKAILETYSGKSVEVEVEKHDNRFCFCKGWSKFVENNKLENGDFLVFKYLSDCSKFKVKIYGKTCCEKEHYYPSETGKNEDERDGLKRKREEEKEQDNNVKEDGSFKAAKRIETDADSDFGEEASEDEPINLDSDTDSSSSHPIDEEEIGNSKQQSSEEKENEEPKSLHSDNQIELKPERPCFRVKLKSSNISSYLNIPLSFSRKYLKESQSQEIRLKTPNKKVWELGLLVLWGVVDKKKEMAGARLSQGWRNLVAEYHLQMGDVCIFELIQPTHKLVFHLHVFRRDAQNKKFIRLL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1560 390 Gene3D - 251 381 IPR015300 -
Acco07g1560 390 ProSiteProfiles B3 DNA-binding domain profile. 274 380 IPR003340 GO:0003677
Acco07g1560 390 ProSiteProfiles B3 DNA-binding domain profile. 63 157 IPR003340 GO:0003677
Acco07g1560 390 Gene3D - 57 159 IPR015300 -
Acco07g1560 390 MobiDBLite consensus disorder prediction 165 211 - -
Acco07g1560 390 SUPERFAMILY DNA-binding pseudobarrel domain 61 162 IPR015300 -
Acco07g1560 390 SUPERFAMILY DNA-binding pseudobarrel domain 269 380 IPR015300 -
Acco07g1560 390 PANTHER B3 DOMAIN-CONTAINING 57 367 - -
Acco07g1560 390 Pfam B3 DNA binding domain 66 155 IPR003340 GO:0003677
Acco07g1560 390 Pfam B3 DNA binding domain 277 379 IPR003340 GO:0003677
Acco07g1560 390 Coils Coil 176 196 - -
Acco07g1560 390 MobiDBLite consensus disorder prediction 212 226 - -
Acco07g1560 390 MobiDBLite consensus disorder prediction 165 268 - -
Acco07g1560 390 MobiDBLite consensus disorder prediction 232 268 - -
Acco07g1560 390 CDD B3_DNA 274 378 IPR003340 GO:0003677
Acco07g1560 390 CDD B3_DNA 64 154 IPR003340 GO:0003677
Acco07g1560 390 SMART B3_2 275 380 IPR003340 GO:0003677
Acco07g1560 390 SMART B3_2 66 157 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1560 Acco-ChrAcco07 30389002 30393312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1560 62 368 B3 DNA Binding Superfamily AT5G66980 28.097 9.00e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco07g1560 B3 1.4e-14 CL0405