Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1559 ATGGTAGTCACTAGAGATAGTGTCTCTGTGGAGAAGGTTGACCTTCAAGAAGGAACTGGTTAGTCATTATTCATCCCCGTAATTGAAACTTTCCAGCTTTCAAATCTCACTGTGATCATCATCTTCTTACTCTTCTCGCCAAAAGCTTCCATGGATAATGATAGAGCTTCACAATCCCAAAGAAAACGCAAGAACCCTTCCTTCTTCAAGGTTCTAATCCAAGATTTCTCTACCCGCCTGCAAATCCCACCAGCTTTTAACAAGGTCTTTGGTAAAGAGGAGCCAAAGAAAGCGATTCTTGAGACTTATTCTGGAAAATCTGTAGAAGTTGAGGTTGAAAAGCATGATAATCGATTTTGTTTCTGTAAGGGATGGAGTAAATTTGTGGAGAATAATAAATTAGAGAATGGAGATTTTTTAGTGTTTAAATACTTGTCAGATTGTTCCAAGTTTAAGGTCAAAATCTATGGCAAAACATGCTGCGAGAAGGAACATTATTATCCTTCAGAAACTGGGAAAAATGAAGATGAGAGAGATGGACTAAAAAGAAAGAGGGAAGAAGAAAAAGAACAAGATAATAATGTGAAGGAAGATGGATCCTTTAAAGCTGCAAAAAGAATTGAGACAGATACTGATTCTGATTTCGGAGACGAAGCTTCAGAAGATGAACCGATCAATCTTGATTCTGATACTGATTCTAGTTCTCATCCTATCGAGGAAGAAGAAATTGGTAATTCGATGCAACCATCGAGTGAAGAGAAGGAGAATGAAGAGCCCAAAAGTTTGCATAGTGATAACCAAATAGAATTCAAACCTGTGAGGCCTTGCTTCCGAGTCAAACTCAAATCTTCAAGTATCAGTAGCTATCTGAATATACCATTAAGCTTTTCACGGAAATATTTAAAGGAGAGTCAAAGCCAAGAGATCAGACTAAAGACGCCCAACGAGAAAGTATGGGAATTGGGTCTTCTTGTGTTGTGGGGAGTTGTTGATAAGAAAAAGGAAATGGCCGGAGCAAGACTGAGTCAAGGATGGAGGAACTTGGTCACAGAATATCATCTCCAAATGGGAGATGTCTGCATCTTTGAATTGATCCAACCAACTCATAAGCTTGTCTTTCATCTTCATGTCTTTAGATGGGATGCTCAAAACAAGAAGTTTATTCGCTTACTTTAG 1176 0.3844 MVVTRDSVSVEKVDLQEGTGXSLFIPVIETFQLSNLTVIIIFLLFSPKASMDNDRASQSQRKRKNPSFFKVLIQDFSTRLQIPPAFNKVFGKEEPKKAILETYSGKSVEVEVEKHDNRFCFCKGWSKFVENNKLENGDFLVFKYLSDCSKFKVKIYGKTCCEKEHYYPSETGKNEDERDGLKRKREEEKEQDNNVKEDGSFKAAKRIETDTDSDFGDEASEDEPINLDSDTDSSSHPIEEEEIGNSMQPSSEEKENEEPKSLHSDNQIEFKPVRPCFRVKLKSSSISSYLNIPLSFSRKYLKESQSQEIRLKTPNEKVWELGLLVLWGVVDKKKEMAGARLSQGWRNLVTEYHLQMGDVCIFELIQPTHKLVFHLHVFRWDAQNKKFIRLL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1559 391 CDD B3_DNA 275 379 IPR003340 GO:0003677
Acco07g1559 391 Coils Coil 178 198 - -
Acco07g1559 391 Gene3D - 253 381 IPR015300 -
Acco07g1559 391 MobiDBLite consensus disorder prediction 214 228 - -
Acco07g1559 391 SUPERFAMILY DNA-binding pseudobarrel domain 272 381 IPR015300 -
Acco07g1559 391 CDD B3_DNA 66 156 IPR003340 GO:0003677
Acco07g1559 391 PANTHER B3 DOMAIN-CONTAINING 59 368 - -
Acco07g1559 391 MobiDBLite consensus disorder prediction 247 267 - -
Acco07g1559 391 ProSiteProfiles B3 DNA-binding domain profile. 275 381 IPR003340 GO:0003677
Acco07g1559 391 MobiDBLite consensus disorder prediction 166 267 - -
Acco07g1559 391 SUPERFAMILY DNA-binding pseudobarrel domain 62 161 IPR015300 -
Acco07g1559 391 MobiDBLite consensus disorder prediction 166 213 - -
Acco07g1559 391 SMART B3_2 68 159 IPR003340 GO:0003677
Acco07g1559 391 SMART B3_2 277 381 IPR003340 GO:0003677
Acco07g1559 391 Pfam B3 DNA binding domain 68 157 IPR003340 GO:0003677
Acco07g1559 391 Pfam B3 DNA binding domain 279 377 IPR003340 GO:0003677
Acco07g1559 391 Gene3D - 59 161 IPR015300 -
Acco07g1559 391 ProSiteProfiles B3 DNA-binding domain profile. 65 159 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1559 Acco-ChrAcco07 30349733 30355332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1559 64 369 B3 DNA Binding Superfamily AT5G66980 27.445 2.76e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco07g1559 B3 3.3e-14 CL0405