Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1550 ATGAAGAAATCATTCATATCTTCGCGCTTCGGGCTTCTTATAAACTTGTTTGCGCCAAATATAAGCCCCTCTTGGCCTTCAGGAGCCGTCGTCTCCTTTCTGTATCTCTCTAACAGAGGATCGATGGCATTTGTTAAGGCTCAAAAATCAAAGGCCTACTTCACGAGATATCAAGTTAAGTTTAAGAGAAGAAGAGAGGGAAAAACTGATTATCGAGCTAGGATTAGGTTGATCAATCAGGACAAGAACAAGTACAACACTCCCAAATATCGCTTTGTTGTTCGATTTACAAACAAAGATATTATTGCACAAATAACATCAGCTAGTATTGCTGGTGATAACGTTCTTGCTGCTGCATATGCACATGAGTTGCCACACTATGGTCTCGAAGCAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGTCTTCTTCTGGCCCGTCGAGTCCTTAAAACCCTTGAAATGGAAGAGGAGTATGAGGGCAATGTAGAGGCTTCAGGAGAGGACTTTTCTGTTGAACCTTCTGATACTAGGAGGCCTTTCCGTGCTCTACTTGATGTTGGTCTTATTAGGACTACAACTGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCATTGGATGGTGGATTAGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTAATAAGGATAAGAAAGAGCTTGATCCTGAGGTTCATCGGAGATATATCTTTGGTGGCCATGTTGCTGCATATATGAAGACTTTGATGGAGGATGAGCCGGAGAAATACCAATCACACTTTAGTGAATATATAAAGCGAGGATTAGAGGCTGATGGACTTGAAGAGATGTACAAAAAGGTTCATGCTGCCATTCGTGCTGACCCCACAATGAAGAAGTCTGAGAAGGAGCCACCAAAGGAACACAAGAGATACAACCTGAAGAAACTTACATACGAGGAGAGAAAGGCTAAGTTGATTGCCCGTGTGCAGGCCCTCAACTCTGTAGTTGATGCTGCTGAAGACGATGAGGATGATGAGTAA 1029 0.4295 MKKSFISSRFGLLINLFAPNISPSWPSGAVVSFLYLSNRGSMAFVKAQKSKAYFTRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDNVLAAAYAHELPHYGLEAGLTNYAAAYCTGLLLARRVLKTLEMEEEYEGNVEASGEDFSVEPSDTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKELDPEVHRRYIFGGHVAAYMKTLMEDEPEKYQSHFSEYIKRGLEADGLEEMYKKVHAAIRADPTMKKSEKEPPKEHKRYNLKKLTYEERKAKLIARVQALNSVVDAAEDDEDDE 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1550 342 SUPERFAMILY Translational machinery components 52 293 - -
Acco07g1550 342 Coils Coil 318 338 - -
Acco07g1550 342 FunFam 60S ribosomal protein L5 42 331 - -
Acco07g1550 342 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 56 216 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 Pfam Ribosomal L18 C-terminal region 276 329 IPR025607 -
Acco07g1550 342 Gene3D - 42 332 - -
Acco07g1550 342 PANTHER RIBOSOMAL PROTEIN L5-RELATED 42 330 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 CDD Ribosomal_L18_L5e 82 211 - -
Acco07g1550 342 Hamap 50S ribosomal protein L18 [rplR]. 55 287 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 205 224 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 185 204 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 247 267 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 61 80 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 125 145 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 PRINTS Ribosomal protein L5 signature 84 103 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Acco07g1550 342 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1550 Acco-ChrAcco07 30147792 30150929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1550 42 329 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.639 0.0 500