Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1338 ATGGCTTCTCCACCACCTTACAACCTAAATGTCGTCGGATCAGAGCCTGAAACCTTCACTGGAACAACTTCTACCTCTGATGATGGAGCTTCTTCGCAACATTTCTCTTCGGCTTTTCAGAATCTCAACACCAGTGTTCTCATTATTGTTATCGTCCTCGCCGTGACCTTCATTGTGTCGCTCTCTCTCTGCCTGCTCCTTCGTCACCTCAATATCCGGTGCCTCCGACGGCTATATCCGTCATCGTTTTCGTCGTCATCCAGGAGGAATGCAACGCCTGCGACTGCGACTACCATGCCTGTTTTTTCTTCGAGCCGTCGCGTCTCGCCGGAGATTCCCTCGGCTTCCATTATTGACTCGCTTCCGATGTTTGAGTTTTCTTCCATTACTCGTCGCTCTTCTGCCTCTGATACTACCGGAAGTGACTGTGCAGTCTGCCTCTCGAAATTTGAGCAGCGAGACCTCCTCCGTCTTCTGCCGCTGTGCTGTCACGCCTTCCATATTGAATGCATTGACACATGGCTTCAGTCCAATTTGACTTGTCCGCTTTGCCGATCTGCGATTTTTGCCTCTGATTCGGAGCTAATGAAGGCTCTCCAATCGTCGCTCGCCGACGCTGGAGGCAGCAATAGTTTCCGGCTAGAAATCGGAAACATCAGCCGCCATGGATCGGCACCACCAGACGTTGCCGGAGATCGGCGTTCGAGGTCGAGGTCTTATTCCGTTGGCTCATTTGAGTATTTCGTTGACGAGGACTTCGAGGTTCCTATAAGCCACGCACATCAAAGAAGCATATCAGACAATAAAGACGAACCGGTCACAGTAGAATCTCAATCGGCCGCGGCAGCTCAGTCCGCTCATGAAGCGAGTTTAGCAGCGGATGTAGCCGGAAGTGGGAGGAGCTGGTGGCTGAAGGAATACATAGACAGGCTGTCATCTTCTATATCGTCCCGAACAGTATCCTTTAGAGGCTCTGGAAGGTTCTTTACCAGCGGCAATGCTAGCCACCGTAGCGACGCCGGCATCTCCGCCGAGGACTGCGATGTGGAAGCAATGAGATTAGGCGAAGAAATTAGCGAAACTTTTCGATGGCTGTCAGGGGTATGA 1107 0.5167 MASPPPYNLNVVGSEPETFTGTTSTSDDGASSQHFSSAFQNLNTSVLIIVIVLAVTFIVSLSLCLLLRHLNIRCLRRLYPSSFSSSSRRNATPATATTMPVFSSSRRVSPEIPSASIIDSLPMFEFSSITRRSSASDTTGSDCAVCLSKFEQRDLLRLLPLCCHAFHIECIDTWLQSNLTCPLCRSAIFASDSELMKALQSSLADAGGSNSFRLEIGNISRHGSAPPDVAGDRRSRSRSYSVGSFEYFVDEDFEVPISHAHQRSISDNKDEPVTVESQSAAAAQSAHEASLAADVAGSGRSWWLKEYIDRLSSSISSRTVSFRGSGRFFTSGNASHRSDAGISAEDCDVEAMRLGEEISETFRWLSGV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1338 368 CDD RING-H2_EL5-like 142 185 - -
Acco07g1338 368 Pfam Ring finger domain 142 185 IPR001841 -
Acco07g1338 368 SUPERFAMILY RING/U-box 119 190 - -
Acco07g1338 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Acco07g1338 368 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Acco07g1338 368 SMART ring_2 143 184 IPR001841 -
Acco07g1338 368 MobiDBLite consensus disorder prediction 262 281 - -
Acco07g1338 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 271 - -
Acco07g1338 368 MobiDBLite consensus disorder prediction 13 30 - -
Acco07g1338 368 FunFam E3 ubiquitin-protein ligase ATL6 102 191 - -
Acco07g1338 368 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1338 Acco-ChrAcco07 24610599 24611705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1338 41 188 C3H Transcription Factor Family AT4G28890 36.129 5.99e-21 91.7