Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1244 ATGGGGAGCATGGGTGAACCGGACAGAAAACGGCGTCACTTTAGTTCCTTGTCCCCTACAGCTGCAGCTGCTACGGCCAAGAAACTACCCTTCTTGCCCATTTCTGAAGACAAAAAGCTTGATATTGCTGTTCTTCAGTTCCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGTTAGATTATACTGCACTTGAGAATAAATTTTTCCAACTAAAGGATGGGCAACATTCATATGATTCCATGTTAACGGTGGTCAAGAAGTCTTGGGAACAGGTAATTGATGATTTGGCGTCATGTTCTGCTCAAATGGTTGAGTCTAGCAGCAGCAAATTGCATACAAATGGTACATCAGTCACAAGTGTTGGTAGTCGATCTACTGTTGAGGGTGATCTTCTTAGCCGACTTGAGCAAACTGGTGCAACAGAAAGTTCCTCCACATATAGTTGGGCCAACCAGATGGAAGAGCAGAGGCAAGTTACTGCTGAAAAAGCTAAGAGCGTTATGCAAAATATTGTAGCAGCTATCAATAACCTTTGGTGTCTGAAAGATGGATTGCATGCTGCAGTGTTAACAAAACTTCCAGCAGATGATGGTATGTGTGGGCCGAAGTCCTCCATTGATCTAAATATGGAAGTTAAAACCTTGAGATCGGCATTTACTGAGCTTCATTTAAAGCACAAGTCTTTGGCTAGCGAGTTCCGAAGTCATCAAGATGTTGATGCCAAAAATAAAGTTGAGCTTAAAAGATTGAAAGGGGAACTGGCAAGCACTGTTGCGGAACTGGAAGAAAGTAATCGCAAATTGGCAACTTTTAAGGCAGAGAGAGATGCAGCAAAAGGGGCAGTTTTTCCTGTCTTAAATGTCGGAACTAAGCATGCTGCTGGTGATAAGATCAGAGACAAGCAACAAAAGGATTTGCAAGAGATGGAATCTTCTTTAAAGGAGATATTGGATCAAGAATCCTCCAGGCTAATGGAACTGAAAAATCTTCACGAAGAAAGAATAAGAATATTACAGCAAATATGTGATTTACAAAACACAGTGAAGAATTTGAAGTGTATTACTTCTTCCCATGCATTCCAACTGGCAAGAGATCAGATAGAACAATCAAAAGTAGAAGTTTTTCAGTATCAGACCTTATTTGAGAAACTACAGGTTGAGAAGGACAATCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAGAGTGATTTGGTAGATGTTTTTCAAAGGTCTATGTCAGTTGTTGAGTCTAAAGTGGCTGATTTAGGGACTGAAATAAAGAAGAAAATTGAGGAGAGAAACGCGTTAGAAAATAAACTGCAAGAGGCAGCAAGGGAACCGGGAAGGAAGCAAATTATTGCAGATTTTAAATCATTGCTTTCTTCATTTCCGGAGGAAATGGGATCTATGCAGAGTAAATTAAGTAAGTATAAAGAAGCAGCATCAGACATTCATTCTCTGCGTGCAGATGTACAGTCTCTCTCTAGTATTCTTGAGAGGAAGATAAAGCAATGTGATGTTTTATCTCATAAATCTGCTGATCAACTTGCTGAGATTCAGAGGCTGCTTGCTGTGGTCAATGATTTGAGAGAAAGCAAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAAGCCATTGAGTCAAGGGATGTTGTGGAGGCACAGGATTCAGAATACAGAGCGTGGGCCCATGTTCAAAGTTTGAAATCTTCTCTTGGCGAACACAACTTAGAGATTCGAGTTAAGACAGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTGGACTTGAGACAGAAATTTGATGCTTCAAAGAGGGAGAAGGGTAAACTCTCTGATGTCTTGAAATCCAAAAGTGAGGAAATTGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATCTACTGCACCAGATTACTGAAAGAGATGACTACAATATCAGGCTTGTCCTAGAGGGTGTGAGGGCAAGACAAAAACAGGAATCTTTGATCATGGAGAAGCAGGCCATCCAACGGGAGATCCAGCAATCAAATGCTTCTCTTAACTTTTATGACGTGAAAGCTGCTAGAATTGACGATCAGATAAAGTCGTGGTCAGATCAGTGTCAGAGGCTTGAGGTGGATAAGGTTCAAAGTTCTGTTACATGGGAAAATACACAAAGGAGGTTGTTGGATGTCGGAAGATCATCTCAACAAGCCAGAGAAACTGTGGAGGAAGTGCAATCTAAAGTTGGTATTAGTCGAGTAACTCATATGGAGTTACAAGTAGACCTAGAGAGAGAAAGGTTTGCCAGGAAAAGATTAGAGGAGGAGCTGGAGATTGCGAGGAGGAAGGTTTCATACCTTCAGGCGCAGATTGAGGGCTCTTCTGTTATTGAAAAGCTTCAGCAGGAGTTAGGGGAATACAGGGAAATTGTCAAGTGCAGTGTCTGCCAAGACAGGACAAAAGAGGTTGTAATTACAAAATGCTATCACTTGGTCTGCAATCCATGTATCCAGAAAGTTGTTGAGAGTAAGCAACGGAAGTGCCCATTATGTGCTGCAAGCTTTGGGCCTAATGATGTTAAGCCCATTTATTTGTAA 2652 0.4114 MGSMGEPDRKRRHFSSLSPTAAAATAKKLPFLPISEDKKLDIAVLQFQNQKLTQKLETQKLDYTALENKFFQLKDGQHSYDSMLTVVKKSWEQVIDDLASCSAQMVESSSSKLHTNGTSVTSVGSRSTVEGDLLSRLEQTGATESSSTYSWANQMEEQRQVTAEKAKSVMQNIVAAINNLWCLKDGLHAAVLTKLPADDGMCGPKSSIDLNMEVKTLRSAFTELHLKHKSLASEFRSHQDVDAKNKVELKRLKGELASTVAELEESNRKLATFKAERDAAKGAVFPVLNVGTKHAAGDKIRDKQQKDLQEMESSLKEILDQESSRLMELKNLHEERIRILQQICDLQNTVKNLKCITSSHAFQLARDQIEQSKVEVFQYQTLFEKLQVEKDNLAWREREWYIKSDLVDVFQRSMSVVESKVADLGTEIKKKIEERNALENKLQEAAREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILERKIKQCDVLSHKSADQLAEIQRLLAVVNDLRESKLELKLILEMYRREAIESRDVVEAQDSEYRAWAHVQSLKSSLGEHNLEIRVKTANEAEARSQQRLATAEAEIVDLRQKFDASKREKGKLSDVLKSKSEEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIRLVLEGVRARQKQESLIMEKQAIQREIQQSNASLNFYDVKAARIDDQIKSWSDQCQRLEVDKVQSSVTWENTQRRLLDVGRSSQQARETVEEVQSKVGISRVTHMELQVDLERERFARKRLEEELEIARRKVSYLQAQIEGSSVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLVCNPCIQKVVESKQRKCPLCAASFGPNDVKPIYL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1244 883 CDD RING-HC_Bre1-like 824 881 - -
Acco07g1244 883 Coils Coil 249 283 - -
Acco07g1244 883 Coils Coil 528 548 - -
Acco07g1244 883 SMART ring_2 831 869 IPR001841 -
Acco07g1244 883 Coils Coil 49 69 - -
Acco07g1244 883 ProSitePatterns Zinc finger RING-type signature. 846 855 IPR017907 -
Acco07g1244 883 Coils Coil 421 448 - -
Acco07g1244 883 Pfam Zinc finger, C3HC4 type (RING finger) 829 871 - -
Acco07g1244 883 SUPERFAMILY RING/U-box 823 882 - -
Acco07g1244 883 PANTHER RING FINGER PROTEIN-RELATED 1 883 IPR013956 GO:0004842|GO:0010390
Acco07g1244 883 Coils Coil 774 808 - -
Acco07g1244 883 Coils Coil 711 731 - -
Acco07g1244 883 Coils Coil 585 619 - -
Acco07g1244 883 Coils Coil 301 321 - -
Acco07g1244 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 883 IPR013083 -
Acco07g1244 883 ProSiteProfiles Zinc finger RING-type profile. 831 869 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1244 Acco-ChrAcco07 21750395 21779005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1244 811 882 C3H Transcription Factor Family AT3G58030 32.895 3.67e-08 55.1