Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1233 ATGGGCAACCACAGAGACCCAGATGGAAGTAGTAGCTTAGGTGGTATTGTGTTTGTTCGGGTGCTCGAAACGGCGTCGTCGTGGTGGTCCTCCTCTGGGGGAGAGAGAGGGAGAGAAATGTTGGGATACGAATGGGGGAACCCTCCGTCGTCGATTGTGCTTACCGGCAACGAAGAAGCTGCCGATACCACCGGTGCAGACTCTGACCAGACCCACCGTCAAATCTTCGACCACTACACTTCGCATTCCTTATTGCCGGACCAGTTCCTTCACCACCACCACCACCACCACCACCATCAGCAGCCGCCTGCAGGGCCCTCACAACACACCACCGCCAGCTCCACCGCTGATTTCTCTCTCTACCAGTTTAGCCCTCAACCCCACCACTACCACCAGCACTACTTCTTTGACCCACGCGCCTTTCCCGGCGCGTCCTCTTCTTCCTTCCCTCCACCACAGCCTCCTCCTCATCCTACTTCCATGCTCTCTCTTGACCCGCTTCCGGCGGTCAACGCCGGCAACCACTGTGGGCCTGGTGGGTTTATGGTCGTTCCCAAGTCCGAGGACATGAGTCGGTCCACTGACTTCCCGGCGTCGAGAATTGGGCTAAACCTTGGTGGCCGGACATACTTCTCATCGTCGGAGGATGACTTCGTGAGCCGGCTATACCGCCGGTCCAGACCAGCCGAACCCGGGTCGATGATGATGATGGCTTCGAACTCGCCTCGGTGCCAAGCCGACGGCTGCAATGCCGATCTGTCACACGCTAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCGGCCACCGTCATCGCCGCCGGCTTAACCCAGCGATTCTGCCAACAGTGTAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGAAAACGAAGCTGCAGGAAGAGACTGGCAGATCATAATCGTCGCAGAAGGAAAACCCAGCAGCCAAATCAAGAAATCCTGAAATCCCAGATCGACACTTCAAGAAATTCTACTTTTGAAGCTGTTACAAGATCTCCACCGGACTCTGGAGGAGCTCAAGCAATGTCGTCGGTGACGGTGGCGTTGTCTCCACCGGACTATTTCCGGCAAACGACATATCAAAATCAGAGGACAAGTCCATCGGCGACATCAAGCTCACTGTTCTTCTCAAGTGGGTAG 1176 0.5578 MGNHRDPDGSSSLGGIVFVRVLETASSWWSSSGGERGREMLGYEWGNPPSSIVLTGNEEAADTTGADSDQTHRQIFDHYTSHSLLPDQFLHHHHHHHHHQQPPAGPSQHTTASSTADFSLYQFSPQPHHYHQHYFFDPRAFPGASSSSFPPPQPPPHPTSMLSLDPLPAVNAGNHCGPGGFMVVPKSEDMSRSTDFPASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGSMMMMASNSPRCQADGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKSQIDTSRNSTFEAVTRSPPDSGGAQAMSSVTVALSPPDYFRQTTYQNQRTSPSATSSSLFFSSG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1233 391 Pfam SBP domain 244 317 IPR004333 GO:0003677
Acco07g1233 391 Gene3D - 236 305 IPR036893 GO:0003677|GO:0005634
Acco07g1233 391 ProSiteProfiles Zinc finger SBP-type profile. 241 318 IPR004333 GO:0003677
Acco07g1233 391 SUPERFAMILY SBT domain 242 321 IPR036893 GO:0003677|GO:0005634
Acco07g1233 391 MobiDBLite consensus disorder prediction 309 391 - -
Acco07g1233 391 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 224 378 IPR044817 GO:0003677
Acco07g1233 391 MobiDBLite consensus disorder prediction 91 113 - -
Acco07g1233 391 FunFam Squamosa promoter-binding-like protein 14 235 305 - -
Acco07g1233 391 MobiDBLite consensus disorder prediction 322 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1233 Acco-ChrAcco07 21261294 21264256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1233 40 291 SBP-box Gene Family AT1G02065 47.490 4.51e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco07g1233 SBP 7.7e-31 No_clan