Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1226 ATGCTCATCGCCACTGCGTTTTCCTCTGTCTCCGCCTTCCGGTTCGCCACCAACAGACTTTCCGAATCTGGTTCAAACAATTCTTTTCCTCTGAAGCTCAGAGCATCTCTCCACGACTATCCGCTCGCAAGCAAACTTTTGGTAAAAAATTTACCATATTCTACTGGTGAGAATATTCTCAAGATGGAATTTTCAAACTTTGGCGAGATAGCTGAAGTTAAAGTTGTTAAAGATACCACAAAAAGATCTAAGGGATATGCCTTTATTCAGTTCACTTCTCAAGATGATGCAATGCTTGCACTAGAAAACATGGATCAAAAGGTATTTGATGGGCGGAAAATATGTGTAGAAGTTGCAAAACCTGGTAAGGACGCTTTTCGCGGCCACCCAAAGACCTCAGGGCCCCCAAAGAAGTGGCATAACCCAGTTCAAGAGGAAGTGGTGGATTGCTGGTACTGA 459 0.4357 MLIATAFSSVSAFRFATNRLSESGSNNSFPLKLRASLHDYPLASKLLVKNLPYSTGENILKMEFSNFGEIAEVKVVKDTTKRSKGYAFIQFTSQDDAMLALENMDQKVFDGRKICVEVAKPGKDAFRGHPKTSGPPKKWHNPVQEEVVDCWY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1226 152 SUPERFAMILY RNA-binding domain, RBD 44 130 IPR035979 GO:0003676
Acco07g1226 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 44 141 - -
Acco07g1226 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 114 IPR000504 GO:0003723
Acco07g1226 152 CDD RRM_SF 46 117 - -
Acco07g1226 152 Gene3D - 32 142 IPR012677 -
Acco07g1226 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 121 IPR000504 GO:0003723
Acco07g1226 152 SMART rrm1_1 45 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1226 Acco-ChrAcco07 20872257 20878687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1226 46 120 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 8.39e-08 48.5