Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco07g1224 | ATGGTTTTTCCACACTCCTTTCACAATGATGGCCTTTTCAACAACCTCTCCAACGGAGAGCTCAACACCGCCAACTCCTACTCTTCCAACTCCTCCAACGACTCCAGCCAATATCTCGATGGACTTCTTCCTCCGCCGCCGCAAAATGCATTTCACAACCACCACCCCCACCACAGTGGATCCTCCTTCGCTGACATGTCCTCCAACAATTTACCTTCCCTCCAATGCTCCGACTTCACTTCTGATGATCCACCCATACCCGTACGTAGCAACACAATTTTCGTCGATGTACCACCACAAGAATGGCTCTCGGAATTTTTGTACAGTTGCTTCAATGACAACTCCTCGGGGACAGGTGAGACGATGGCGCTGGCGGGTTTCTCTGCTGCACAATTCGACGCGTCGTTTACTAGCAAAGTTGGTCATTGGAGTTCGAGAGCAGCCGGTGGAAAATCGAGACTTAAAACAGAGCAAAACGGTGGGTCGTCGTCGTCGTCGGGAGAGGGATCAGGTAAGCGTAGGTGCACCCACTGTGCGGCAGATGATACCCCGCAATGGCGAAGTGGACCCCTGGGACCCAAGACGCTGTGCAATGCGTGCGGGGTGAGGTACAAGTCGGGTCGTCTTGTCCCCGAATACCGACCCGCATCAAGTCCGACGTTCGTGCTGAGTCAGCACTCGAACTCGCACCGGAAGGTGCTGGAGCTCCGGAGGCAGAAGGAGCTGACGATAAAGCAGGAAGCCATATACGAGTAA | 756 | 0.5384 | MVFPHSFHNDGLFNNLSNGELNTANSYSSNSSNDSSQYLDGLLPPPPQNAFHNHHPHHSGSSFADMSSNNLPSLQCSDFTSDDPPIPVRSNTIFVDVPPQEWLSEFLYSCFNDNSSGTGETMALAGFSAAQFDASFTSKVGHWSSRAAGGKSRLKTEQNGGSSSSSGEGSGKRRCTHCAADDTPQWRSGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLSQHSNSHRKVLELRRQKELTIKQEAIYE | 251 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco07g1224 | 251 | SMART | GATA_3 | 169 | 219 | IPR000679 | GO:0006355|GO:0043565 | |
| Acco07g1224 | 251 | CDD | ZnF_GATA | 174 | 221 | IPR000679 | GO:0006355|GO:0043565 | |
| Acco07g1224 | 251 | MobiDBLite | consensus disorder prediction | 24 | 39 | - | - | |
| Acco07g1224 | 251 | Pfam | GATA zinc finger | 175 | 208 | IPR000679 | GO:0006355|GO:0043565 | |
| Acco07g1224 | 251 | MobiDBLite | consensus disorder prediction | 24 | 66 | - | - | |
| Acco07g1224 | 251 | MobiDBLite | consensus disorder prediction | 151 | 171 | - | - | |
| Acco07g1224 | 251 | FunFam | GATA transcription factor | 165 | 250 | - | - | |
| Acco07g1224 | 251 | Gene3D | - | 166 | 246 | IPR013088 | GO:0006355|GO:0008270 | |
| Acco07g1224 | 251 | ProSitePatterns | GATA-type zinc finger domain. | 175 | 200 | IPR000679 | GO:0006355|GO:0043565 | |
| Acco07g1224 | 251 | ProSiteProfiles | GATA-type zinc finger domain profile. | 169 | 205 | IPR000679 | GO:0006355|GO:0043565 | |
| Acco07g1224 | 251 | PANTHER | GATA TRANSCRIPTION FACTOR | 28 | 241 | - | - | |
| Acco07g1224 | 251 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 171 | 232 | - | - | |
| Acco07g1224 | 251 | MobiDBLite | consensus disorder prediction | 147 | 178 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco07g1224 | Acco-ChrAcco07 | 20848739 | 20849588 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco07g1224 | 45 | 249 | C2C2-Gata Transcription Factor Family | AT2G45050 | 42.017 | 1.39e-47 | 157 |
Transcription factors information