Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1212 ATGAGCTTCTGCGTACCCACCTGGGACGTTGACAATAATGTTCCCTCAGCCACCAGAACCTCTCTTCCTTCTAACTCCAACTCCACTGTCCCTGATCTCATCCCCACGTTTGACTATGAAGTTGCAGAGCTTACATGGCAGAATGGGCAGATATGGATGAACGGGATGGGTCTGCCACGATCTCCGGTGAAACCCATTACTTCCGGTGTGGCGGAGAATGCAAGGTCCAATCTGTTGGCCTCCAATAATTCTAAGTATCGTGCTAGCGGTACTTTAGAGTCCATAGTCAATCAAGCTACTAGGTTCTCCAAGAATAGCAAATCAATGATGTCACAAAGTGTTGACGGAAACTGCGGCGGCTGTGGTGACGGAGACAAGTTGGTGACATGGTTTAAATACCGAACCGATGGTGAGGGCGGCGCTGGCGCTGCTGTATCAAACACAATGACTATGGATGCTTTGGTTCCTTGCTCGAATCGTACGGATGAACAGAGTACGGCGGTTGTAGATGAATCTGTGGGTGGAGGGATTGGCACGCGCGGTGGCGGATTGGGAATGGGTTGCTCAGTACATGAGGGGTATTGTGGCGGTGGTGTTGCTAGAGTCCCGGCGGTGGCGCGTGTGCCTGTAGCCCGCCAGTGGGATCAAAGTGTGAGTGAGAGAGATAGCCATCACGTGACCCCTGACACCTGCGATAGGGAAATGGATGTGGATTATACTTCTGCTTCAATGGGTTCGCCGGAAAACACCAGCTCTGTCAGGCCGTGCGCAAAGAAGACCGCCGCTGATGACCATGATTCTGTTTGCCACAGTACCCAGAGAGATGAAGCTGAGGAGGAGGACAAAAAAGAAAGGACTATAAAATCTTCAGCTTCCAACAAAGGGCGTAGAGCTGCTAATGTGCACAATCAATCTGAAAGAAAAAGGCGAGACAAGATCAACCAAAGGATGAAGACATTGCAGAAGCTGGTTCCAAATTCCAGCAAGACTGATAAAGCTTCAATGCTGGATGAAGTAATAGACTATGTGAAGCAACTTCAAGCACAAGTGCAAATGATGAATAGAATGAGTCTACCTTCCATTATGTTGCCAATGACCCTGCAACAGCAACAACTTCAACTCATGTCCATGATGGCTCCAATGGGTATGGGATTGGGTATGGACATGAACACTATGGCCCGCCCTAACATCCCCACCCTCCCTCCGATTCTCCACCCTTCCACCGCCTCTGGCTTCATGCCGATGGCTAGCTCATGGGACCCGTCTACTGGCGGCAATCGGCTACAAGGAGCAGTGCCTGACTTCTGGTCGTCATTCCTTGCATGCCAGACACAGCCCATGACCATGGATGCATACAGTAGGATGGCTGCTATGTATCAGCAAATGCAGAAAGCTCCAGCTTCTAGTTCCAAGAACTGA 1419 0.5025 MSFCVPTWDVDNNVPSATRTSLPSNSNSTVPDLIPTFDYEVAELTWQNGQIWMNGMGLPRSPVKPITSGVAENARSNLLASNNSKYRASGTLESIVNQATRFSKNSKSMMSQSVDGNCGGCGDGDKLVTWFKYRTDGEGGAGAAVSNTMTMDALVPCSNRTDEQSTAVVDESVGGGIGTRGGGLGMGCSVHEGYCGGGVARVPAVARVPVARQWDQSVSERDSHHVTPDTCDREMDVDYTSASMGSPENTSSVRPCAKKTAADDHDSVCHSTQRDEAEEEDKKERTIKSSASNKGRRAANVHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIDYVKQLQAQVQMMNRMSLPSIMLPMTLQQQQLQLMSMMAPMGMGLGMDMNTMARPNIPTLPPILHPSTASGFMPMASSWDPSTGGNRLQGAVPDFWSSFLACQTQPMTMDAYSRMAAMYQQMQKAPASSSKN 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1212 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 346 IPR011598 GO:0046983
Acco07g1212 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 300 358 IPR036638 GO:0046983
Acco07g1212 472 MobiDBLite consensus disorder prediction 242 256 - -
Acco07g1212 472 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 471 IPR031066 -
Acco07g1212 472 MobiDBLite consensus disorder prediction 214 314 - -
Acco07g1212 472 MobiDBLite consensus disorder prediction 300 314 - -
Acco07g1212 472 Coils Coil 303 323 - -
Acco07g1212 472 MobiDBLite consensus disorder prediction 217 236 - -
Acco07g1212 472 FunFam transcription factor UNE10 isoform X1 292 357 - -
Acco07g1212 472 CDD bHLH_AtPIF_like 297 357 IPR047265 -
Acco07g1212 472 SMART finulus 303 352 IPR011598 GO:0046983
Acco07g1212 472 Gene3D - 292 357 IPR036638 GO:0046983
Acco07g1212 472 MobiDBLite consensus disorder prediction 258 291 - -
Acco07g1212 472 Pfam Helix-loop-helix DNA-binding domain 301 347 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1212 Acco-ChrAcco07 20556868 20560548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1212 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.497 1.50e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco07g1212 HLH 5.6e-14 No_clan