Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1209 ATGGCTGAAAAAGTATGGATCAATTCACCATCCGCCATTGCATTCGCCTTCACCGTCTATCGTTGCCTTCGTCTTCACCGTGATAAAGTTGGAAGAAGACTCTGTGATATGAGCAAGTTGGAAGTGACGGATAGGAAATTTGAAAAGAGAGATCTTCAGCTTCCATTAGCCTCTCAATTCTTCAATCCTCTTATGGCTTTGTTTTCATTCTTGCTCATAGTGAGCGCTTCTTCTTGCTCCAGTAACCCTAGAAAGTTTCTTAATTCTTCTTCATCCTGCACTTCTGATTCCGATTGGTCTCTGGCAGATGCTACATGGTACGGAAGCACTATCGGCGATGGAAGTGAAGGTGGTGCTTGTGGATATGGCAGTACTGTAGGACAACCTCCATTTTCTTCGATGATATCATCAGGCGGCTCACCTATATATAATTCAGGCAAAGGCTGTGGGTGTTGCTATGAGGTGAAGTGCACGTCGAATGAAGCATGTTCTGGTAACCCTGTGACCGTTGTGATCACTGATGAGTGTCCTGGGTGTGGTTCTGCTCAGAGATTTCACTTTGATTTGAGTGGCACTGCTTTTGGGGCCATGGCTGTTTCTGGTCAAGAAGATCAACTACGCAATGCTGGGAAGTTGGAGATTCAACATAGAAGTATTAAATGTAACTTCCCAGGGACAACTATAGCATTTAAAGTGGACTCAGGATCAAACCCATATTATTTTGCCGTTATGATAGAATATGAGAATGGACATGGCCTTGCCCACGTTGAACTCAAGGAAGCTCAGGATTCAGCTTCATGGCGTCCGATGCAACAATCCTGGGGTGCTGTTTGGAAGCTTAACTCTGGCTCACCACTTCAGCCGCCATTCTCACTCCGGCTAATTGCACCGGAGTCGATGGACTCTCAGAACACCGTGGAGGCAAGCAATGTGATCCCAGCAGGGTGGAGTCCTGGTCAGACTTATCGATCTCTGGTCAACTTCCCCTAA 990 0.4626 MAEKVWINSPSAIAFAFTVYRCLRLHRDKVGRRLCDMSKLEVTDRKFEKRDLQLPLASQFFNPLMALFSFLLIVSASSCSSNPRKFLNSSSSCTSDSDWSLADATWYGSTIGDGSEGGACGYGSTVGQPPFSSMISSGGSPIYNSGKGCGCCYEVKCTSNEACSGNPVTVVITDECPGCGSAQRFHFDLSGTAFGAMAVSGQEDQLRNAGKLEIQHRSIKCNFPGTTIAFKVDSGSNPYYFAVMIEYENGHGLAHVELKEAQDSASWRPMQQSWGAVWKLNSGSPLQPPFSLRLIAPESMDSQNTVEASNVIPAGWSPGQTYRSLVNFP 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1209 329 Gene3D - 223 328 IPR036749 -
Acco07g1209 329 Pfam Expansin C-terminal domain 228 313 IPR007117 -
Acco07g1209 329 SMART dpbb_1 139 216 IPR007112 -
Acco07g1209 329 CDD DPBB_EXPB_N 102 221 - -
Acco07g1209 329 Gene3D - 83 222 IPR036908 -
Acco07g1209 329 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 239 324 IPR007117 -
Acco07g1209 329 SUPERFAMILY PHL pollen allergen 227 324 IPR036749 -
Acco07g1209 329 PANTHER EXPANSIN-B3 74 328 - -
Acco07g1209 329 PRINTS Expansin/Lol pI family signature 139 157 IPR007118 GO:0005576
Acco07g1209 329 PRINTS Expansin/Lol pI family signature 209 225 IPR007118 GO:0005576
Acco07g1209 329 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Acco07g1209 329 PRINTS Expansin/Lol pI family signature 98 113 IPR007118 GO:0005576
Acco07g1209 329 PRINTS Expansin/Lol pI family signature 116 134 IPR007118 GO:0005576
Acco07g1209 329 Pfam Lytic transglycolase 137 214 IPR009009 -
Acco07g1209 329 PRINTS Major pollen allergen Lol pI signature 276 293 IPR005795 GO:0005576|GO:0019953
Acco07g1209 329 PRINTS Major pollen allergen Lol pI signature 230 245 IPR005795 GO:0005576|GO:0019953
Acco07g1209 329 PRINTS Major pollen allergen Lol pI signature 198 213 IPR005795 GO:0005576|GO:0019953
Acco07g1209 329 PRINTS Major pollen allergen Lol pI signature 157 167 IPR005795 GO:0005576|GO:0019953
Acco07g1209 329 PRINTS Major pollen allergen Lol pI signature 137 148 IPR005795 GO:0005576|GO:0019953
Acco07g1209 329 SUPERFAMILY Barwin-like endoglucanases 98 246 IPR036908 -
Acco07g1209 329 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 117 226 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1209 Acco-ChrAcco07 20351420 20355909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1209 83 328 Expansin Gene Family AT1G65680 60.729 2.36e-106 310