Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1200 ATGGAGAAGCACAAGTGCAAGCTCTGCTTTAGAAACTTCTCTAATGGCAGAGCTTTGGGAGGTCACATGAGATCTCACATGGTGAATCTTCCTGTTCCTCCAAAACCAGAGCCACCATTAGCCCAACTAAGCTTCGAGGCCCACTCTTCTCCGTCGTCTTCATCAGACGAAGAAGATGATGATGATAAAGCTCTCTATTATGGCCTCCGAGAGAACCCTAAACGAAGCTTTCGCCTTGTGGATCCTGACTTTTCCTTCCCCGTAGAATCCGCCTCTGCAATTCTTCAAGACAGAGAAAGCGAAACTGAATCGTCCAAGAATCCAACTCGAAGAAGATCCAAAAGGGCATTTAATAATAATTTCCAGTTCCACCACCTTCAGAAGAAGATAAAACCCAATAATGATCATCACCATCATAAGAATAAGACCGAGTCGTCTTCTTGGGTTGAGCCTGAACCGGTGAGTTCGATCTCCGATGCGACCACCGAAGATGTCGCATTTTGTCTTATGATGTTGTCCAGGGACGAATGGAAGAAACAAGAGGAAAAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGAAGAGGACGAAGAAGAAGAGGAAGAAGAGGAAGAAGAAGACGAGGAGGAGGAAGATGACGAAGGAGAGAGATCTGTGGAAGATTCTGATGAATTCTACGAGGAGATGAAATCATCGAAGGCAAGATCAGTTCGTGGAAGGTACAAATGTGAGACGTGTAAGAAAGTGTTTAGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAGAAAATCAAAGCGGTGGCCATATGTGAAACAGATAGTAATGCTCCGGCCATGGCGGCGGCGTTGGCGGAGAAGAAAATCCATGAATGTCCAGTTTGTTTCAGAGTGTTTGCTTCAGGTCAAGCTCTTGGGGGCCACAAGCGAACACACGTGACTGGTTCTGCAACTTCGGTTGTTCGAAGTAGTACACCATCATCAACAACAACCAAGTTTGGAGATAACAACAATACTAACAACAGTTTGATAGATCTTAACCTTCCGGCTCCAGTTGATGAAGAAGATGAGATCAGCCAAATTGAAAATTCTGCAATTTCAGATTCAGAATTCTTCAAACCCAGTTCACAGATCATTGAGGCACAAGTATAG 1161 0.4436 MEKHKCKLCFRNFSNGRALGGHMRSHMVNLPVPPKPEPPLAQLSFEAHSSPSSSSDEEDDDDKALYYGLRENPKRSFRLVDPDFSFPVESASAILQDRESETESSKNPTRRRSKRAFNNNFQFHHLQKKIKPNNDHHHHKNKTESSSWVEPEPVSSISDATTEDVAFCLMMLSRDEWKKQEEKDEEEEEEEEEDDEEDEEEEEEEEEEDEEEEDDEGERSVEDSDEFYEEMKSSKARSVRGRYKCETCKKVFRSYQALGGHRASHKKIKAVAICETDSNAPAMAAALAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATSVVRSSTPSSTTTKFGDNNNTNNSLIDLNLPAPVDEEDEISQIENSAISDSEFFKPSSQIIEAQV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1200 386 MobiDBLite consensus disorder prediction 27 64 - -
Acco07g1200 386 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Acco07g1200 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 293 320 IPR013087 -
Acco07g1200 386 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Acco07g1200 386 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 377 IPR044303 GO:0006355
Acco07g1200 386 MobiDBLite consensus disorder prediction 92 161 - -
Acco07g1200 386 Gene3D Classic Zinc Finger 240 315 - -
Acco07g1200 386 ProSitePatterns Zinc finger C2H2 type domain signature. 295 315 IPR013087 -
Acco07g1200 386 MobiDBLite consensus disorder prediction 177 233 - -
Acco07g1200 386 Pfam C2H2-type zinc finger 242 267 - -
Acco07g1200 386 Pfam C2H2-type zinc finger 4 27 - -
Acco07g1200 386 Pfam C2H2-type zinc finger 293 315 - -
Acco07g1200 386 MobiDBLite consensus disorder prediction 182 224 - -
Acco07g1200 386 MobiDBLite consensus disorder prediction 147 161 - -
Acco07g1200 386 MobiDBLite consensus disorder prediction 319 341 - -
Acco07g1200 386 Coils Coil 172 216 - -
Acco07g1200 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
Acco07g1200 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Acco07g1200 386 SMART c2h2final6 243 265 IPR013087 -
Acco07g1200 386 SMART c2h2final6 293 315 IPR013087 -
Acco07g1200 386 SMART c2h2final6 4 26 IPR013087 -
Acco07g1200 386 SUPERFAMILY beta-beta-alpha zinc fingers 242 315 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1200 Acco-ChrAcco07 20053752 20054912 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1200 1 364 C2H2 Transcription Factor Family AT3G60580 40.811 4.06e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco07g1200 zf-C2H2_6 9.4e-12 CL0361