LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g1145	ATGTCCTCTCTACTTCTTCTCTTCCTTCTTCTTCTACTCTCCCTATTCCCCATTATTCTCGCTTCTTCCTCAGAGCTTGACACTCTCATGGCTATCAAATACTCTCTCGACCCACAGAACCGTTTTCTGACCTCCTGGACTCCATATTCCGACCCGTGTACCGGCGCTTTCGACGGCGTAGCATGCAACGAGCAAGGCCGCATCGCCAATATCTCGCTCCAAGGAAAGGGTCTCTCCGGCAGCCTTCCGGCGGCCATTAGTGAACTCAAGAGCTTGACTGGTCTCTATCTCCACTTCAATGCTCTCACTGGGACGATACCCAAGGAGATTGCAAATTTGAGCGAACTAACTGATTTGTACCTCAATGTCAATAATCTCTTCGGCGATATCCCTCGTGTGATTGGAAATATGTCTAATCTTCAAGTTTTGCAGCTTTGTTATAACAAATTTACAGGGAGTATTCCTACGGAGTTTGGAAACTTAGAGAGACTTAGTGTTCTTGCTCTGCAATATAATGAGTTGAGTGGTGCAATTCCTGCTAGTTTGGGCCAGTTGCAGTCATTAACGAGGCTGGATCTGAGCTTTAATAACCTTTTTGGTCCTATTCCGGTGAGACTAGCAGATGCTCCCAAACTAGAAAGCCTTAATATTCAGAACAACTCTCTCTCTGGCAATGTCCCTGCAGCTCTTAGAAGACTGAGAGGTGGTTTCCAGTACATCAACAACCCTGGCTTATGTGGGACTGAATTTACCAATTTAGTTGCTTGTAAATCTTTATTTGACCCTAGTAAGCCTGAACCATTTGAACCTGATAACTTTTCCTCAAAGGGTCTGCCGGCATCAGTTGAACCAAAGGATGAAAAGTGCAATGATGAAACCCACTGTAAAAAGTCAATGCAATATTCAAGAATGGCTTTAGTTTTTGGAGGGATTGGAATTATTGTCGCTTCCACAGTTTCTGGACTTTCCATGTTTGTGTGGTTTCGGCGTCAAAAACAGAAGATTGAAAGCACTAATAATGCTTCTGATAGCCATGTTAACCAGAAAAATGTGGCTCCTTTGATCAGTTTAGAATATTCTAATGGATGGGATCCATTAGCCAAAGGTAAGAATACTTATTCCCAGGAAGTTCTAGAGAGCTTTATGTTCAATCTAGAGGAGGTAGAATGTGCTACTCAATGCTTCTCTGAGGCGAATTTGTTGGGGAAGAGTAACTTGTCAGGAATTTACAGGGGAATTTTGAGAGATGGTTCAGTTGTGGTTGTAAAATGCATCAACATGACAAGCTGCAAGTCTGATGAAACTGAGTTCTTGAAGGGGTTGAAGATATTGACCTCATTAAAACACGAAAATCTCGTTCGCTTGAGAGGTTTTTGCTGTTCTAAAGGCAGGGGAGAGTGCTTTCTTGTTTATGATTTTGTCCCAAATGGAAATTTGTCTCGGTATTTGGATCTCAAGAAAGGTGACACTAAGATTCTAGAATGGTCTGCCAGAGTATCCATCATCCATGGTATTGCTAGAGGTATTAGTTATCTGCATGGAAAGAAGGGAAGAAAACAGGCTCTCGTTCACCAGAATATATCAGCTGAAAATGTGCTTCTTGATGCACATTACAATTCATTACTTGCAGATTCAGGATTGCACAAACTCCTTGCTGATGATGTTGTCTTCTCCGCCCTTAAAGCTTCTGCTGCCATGGGATACCTTGCTCCAGAATATGCCACCACTGGTCGCCTAACCGAAAAAAGCGACATATATTCTTTCGGGGTGATAGTTTTCCAGCTTCTAACTGGAAAGAGCAATATCACTCAGTTATATCATTGCCAGACACAAGCATATGGTTTTAATGACATTGTTGATGTAAACCTTGAAGGAAGATTTTCAGAATCTGAGGCAGCTAAACTAGGGAGCATTGCTCTACTTTGCACACATGAATCACCCCATGAACGACCATCAATGCACCATGTAATGCAAGAACTGTCTGGGAAGTAG	1992	0.4252	MSSLLLLFLLLLLSLFPIILASSSELDTLMAIKYSLDPQNRFLTSWTPYSDPCTGAFDGVACNEQGRIANISLQGKGLSGSLPAAISELKSLTGLYLHFNALTGTIPKEIANLSELTDLYLNVNNLFGDIPRVIGNMSNLQVLQLCYNKFTGSIPTEFGNLERLSVLALQYNELSGAIPASLGQLQSLTRLDLSFNNLFGPIPVRLADAPKLESLNIQNNSLSGNVPAALRRLRGGFQYINNPGLCGTEFTNLVACKSLFDPSKPEPFEPDNFSSKGLPASVEPKDEKCNDETHCKKSMQYSRMALVFGGIGIIVASTVSGLSMFVWFRRQKQKIESTNNASDSHVNQKNVAPLISLEYSNGWDPLAKGKNTYSQEVLESFMFNLEEVECATQCFSEANLLGKSNLSGIYRGILRDGSVVVVKCINMTSCKSDETEFLKGLKILTSLKHENLVRLRGFCCSKGRGECFLVYDFVPNGNLSRYLDLKKGDTKILEWSARVSIIHGIARGISYLHGKKGRKQALVHQNISAENVLLDAHYNSLLADSGLHKLLADDVVFSALKASAAMGYLAPEYATTGRLTEKSDIYSFGVIVFQLLTGKSNITQLYHCQTQAYGFNDIVDVNLEGRFSESEAAKLGSIALLCTHESPHERPSMHHVMQELSGK	663

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g1145	663	FunFam	Protein NSP-INTERACTING KINASE 2	367	473	-	-
	Acco07g1145	663	SUPERFAMILY	Protein kinase-like (PK-like)	373	659	IPR011009	-
	Acco07g1145	663	Gene3D	Transferase(Phosphotransferase) domain 1	475	663	-	-
	Acco07g1145	663	CDD	STKc_IRAK	401	660	-	-
	Acco07g1145	663	Gene3D	Ribonuclease Inhibitor	22	172	IPR032675	-
	Acco07g1145	663	Gene3D	Phosphorylase Kinase; domain 1	365	473	-	-
	Acco07g1145	663	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	71	662	-	-
	Acco07g1145	663	Pfam	Leucine rich repeat	138	198	IPR001611	GO:0005515
	Acco07g1145	663	SUPERFAMILY	L domain-like	24	233	-	-
	Acco07g1145	663	FunFam	Protein NSP-INTERACTING KINASE 2	136	257	-	-
	Acco07g1145	663	MobiDBLite	consensus disorder prediction	267	289	-	-
	Acco07g1145	663	Pfam	Protein tyrosine and serine/threonine kinase	399	660	IPR001245	GO:0004672\|GO:0006468
	Acco07g1145	663	Pfam	Leucine rich repeat N-terminal domain	23	63	IPR013210	-
	Acco07g1145	663	ProSiteProfiles	Protein kinase domain profile.	395	663	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g1145	663	FunFam	Leucine-rich repeat receptor-like kinase	24	135	-	-
	Acco07g1145	663	Gene3D	Ribonuclease Inhibitor	173	238	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g1145	Acco-ChrAcco07	18003221	18007176	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g1145	9	508	Miscellaneous Gene Families	AT4G22730	50.191	1.18e-176	511

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IV	Acco07g1145		PK_Tyr_Ser-Thr	2.1e-38	CL0016