Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1054 ATGGTGAGAGGGAAGATAGAGATGAAGCGTATAGAGAACGCGACCAACAGACAAGTAACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAAGCTTTTGAACTCTCAGTTCTGTGTGATGCTGAGGTTGCTCTCATAATCTTCTCTCCCAGAGGCAAGCTCTATGAATTCTCAAGATCCAGGTATGTGTCTTTGTGTGAGACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCACCAGATACATGGAACAAAATATGCAGCTTTTAAAGGAAGAAACAGAAAGTATGATGGAGAAGGTTGAACACCTTGAAGATACAAAACGGAGACTCTTGGGAGAAGGGTTAGGCTCATGCTCACTAGCAGAACTAGAAGAGTTACAAAAGCAGTTGCTAAAGAGTGCAGCAATCGTCCGAGCAAGAACGGAACAAAACCTAACAGCAGAAAACTCAAGGCTCTGTAACGAGTATGGTATCATGCTTGGTACGACAGAGAATACAAGTGAAAATCCAACCTCCTCAGATATTAGTCCAACTTTAGATGTGGAAACTGACTTGTTCATTGGACTCCCAGAAACAAGAACAAAGAACAAAACTATTCCTCATAATACTCCTGAGTCCTGA 633 0.4139 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSRSRYVSLCETIERYRSYTRDAETATRYMEQNMQLLKEETESMMEKVEHLEDTKRRLLGEGLGSCSLAELEELQKQLLKSAAIVRARTEQNLTAENSRLCNEYGIMLGTTENTSENPTSSDISPTLDVETDLFIGLPETRTKNKTIPHNTPES 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1054 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 FunFam MADS-box transcription factor MADS-MC 13 89 - -
Acco07g1054 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco07g1054 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Acco07g1054 210 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Acco07g1054 210 Coils Coil 90 110 - -
Acco07g1054 210 Pfam K-box region 87 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco07g1054 210 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Acco07g1054 210 CDD MADS_MEF2_like 3 81 IPR033896 GO:0000977|GO:0045944
Acco07g1054 210 ProSiteProfiles K-box domain profile. 90 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco07g1054 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1054 Acco-ChrAcco07 15000226 15005987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1054 1 147 MADS-box Gene Family AT2G45660 62.585 4.74e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco07g1054 K-box 5.5e-13 No_clan