Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1053 ATGGTGAGAGGGAAGACACTGATGAAGCGTATAGAGAACGCAACGAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAAGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCGGGCAACAATTGAACGTTACCGCAATCATAAAAGAGATGCTCAAACAGCCACCAGATTTGTAGGACAAAATATGCAGCATCTAAAGCAAGAAACAGAAAGTATGATGAAGAAGATTGAGCAGCTTAAAATTTCAAAACGGAAGCTCTTGGGAGAAGAGTCTGGCTCATGCTCCGTAAAAGAACTAGAAGAGATTGAACAGCAATTGGAAAGCAGTGCAAGAAAAGTTCGTGAGAGGAAGAGTCAAGTTTATAACGAACAAATGGAGCAACTAAAAGAAAAGGGAAAGACCCTAGCAGCAGAAAATGCAAGGCTGTCGGAGAAGGATAATAGCTTGGCAAAGCAAGCAAGAGAGAAGAATGATGGTGAAAATGCAGCCTCCTTAGAAATTACTCCAACTTCAGAAGTGGAAACTGACTTGTTTATTGGATTACCAGATACAAGAAGCATCACTCTTCCCCTTCATGCGTTCTGA 660 0.4182 MVRGKTLMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMRATIERYRNHKRDAQTATRFVGQNMQHLKQETESMMKKIEQLKISKRKLLGEESGSCSVKELEEIEQQLESSARKVRERKSQVYNEQMEQLKEKGKTLAAENARLSEKDNSLAKQAREKNDGENAASLEITPTSEVETDLFIGLPDTRSITLPLHAF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1053 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Acco07g1053 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Acco07g1053 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 MobiDBLite consensus disorder prediction 168 186 - -
Acco07g1053 219 Coils Coil 87 107 - -
Acco07g1053 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco07g1053 219 FunFam MADS-box protein SOC1 14 95 - -
Acco07g1053 219 MobiDBLite consensus disorder prediction 168 194 - -
Acco07g1053 219 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco07g1053 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Acco07g1053 219 Coils Coil 121 170 - -
Acco07g1053 219 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Acco07g1053 219 ProSiteProfiles K-box domain profile. 87 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco07g1053 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1053 Acco-ChrAcco07 14951159 14966950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1053 1 158 MADS-box Gene Family AT2G45660 70.886 2.11e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco07g1053 K-box 6.4e-23 No_clan