Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1048 ATGGTGAGAGGGAAGACACAGATGAAGCGTATAGAGAACGCAACGAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAAGCTTTTGAGCTCTCAGTTCTTTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCGGGCAACAATTGAACGTTACTGCAATCATAAGAGAGATGCTCAAACAGCCACCAGATTTTTAGAACAAAATATGCAGACCTTGGATTATTGA 279 0.4229 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMRATIERYCNHKRDAQTATRFLEQNMQTLDY 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1048 92 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Acco07g1048 92 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Acco07g1048 92 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Acco07g1048 92 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Acco07g1048 92 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 88 - -
Acco07g1048 92 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco07g1048 92 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1048 Acco-ChrAcco07 14712528 14718199 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1048 1 92 MADS-box Gene Family AT2G45660 77.174 3.89e-48 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco07g1048 SRF-TF 1.4e-27 No_clan