Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g1044 ATGAGTGAGAGTTCATGGCAACTACGATATTCTTCCCAACTCTTAAGACAGAGCATTGCGATGACGATTAGACCTAGGATCGAGAGGTGTAAAGAATTAATAAAGATGGTGAGAGGGAAGATAGAGATGAAGCGTATAGAGAACAAAACAAACAGGCAAGTGACATTCTCAAAGAGGCGTAATGGACTCTTGAAGAAGGCTTCTGAGCTCTCAGTTCTGTGTGATGTAGAGGTAGCCCTCATCGTCTTCTCTGCCAAAGGCAAACTCTATGAATTTTCAAGCTCCAGGTATGTGTGTGTGTATTTGTATCTGGATATATGTATATGTATGTATGTATGTATTCAAGCTCCACATCATTATCTGTTTTAA 369 0.3984 MSESSWQLRYSSQLLRQSIAMTIRPRIERCKELIKMVRGKIEMKRIENKTNRQVTFSKRRNGLLKKASELSVLCDVEVALIVFSAKGKLYEFSSSRYVCVYLYLDICICMYVCIQAPHHYLF 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g1044 122 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 SUPERFAMILY SRF-like 38 97 IPR036879 GO:0003677|GO:0046983
Acco07g1044 122 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 96 - -
Acco07g1044 122 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 CDD MADS_MEF2_like 38 95 IPR033896 GO:0000977|GO:0045944
Acco07g1044 122 ProSitePatterns MADS-box domain signature. 38 92 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 Gene3D - 48 103 IPR036879 GO:0003677|GO:0046983
Acco07g1044 122 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Acco07g1044 122 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g1044 Acco-ChrAcco07 14593575 14595101 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g1044 36 95 MADS-box Gene Family AT4G11880 86.667 6.53e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco07g1044 SRF-TF 3.8e-28 No_clan