LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g1024	ATGGCAGGATCTGAATCAAACAGACCCATCAAAAAGATCAAAAGGTTCATAGGGGTCAGACAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCGTCTCAACATGTGAGGCTATGGCTCGGAACCTATGACACCCCGGAGGAAGCGGCTCAGGCTTACGACGAGGCGGCTCGGACCCTGCGTGGTGAAAACGCCCGAACCAACTTCGCATCACCGGCTAGCCAATCAGTCGCAGATGAGTCTGAGTCCAAAGCCAAGCATGGGCTAAATTTTGCTGCTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAATATAATGACCAGATCAGGAAGTAGTGAAACGACGTCGTCCAAGAGTAGGGTAAGTGACCATATCACTTTTGCTAGCATATTTCATCGCAGGAGGAGTTTCCTACCGTTTCAGATCTCTTCATCATCACTTGAAACGATGAAGAACATGGAGATTATGGTGCAGCCTAGTATTATAGTACCTCCAGCTAAAGAAACTGATAATCGTCAGCCTTCTTCTTGGGAAAATTCCAGTGTCTCTGATGATTGTGGATACTCCGATCATTTGGTCGGGCGCCGGCAAACAGTGACGGCAGAATCCACCATGTCAGAAGGGTCAGATGCCGGGGAGGTTAGTACTGTAGGGGATCAAGGGCTTATGGAGAAAGTGATGGGGTGGATCAATAATAGCCCTGATGAGCAGGGTTCAAGGACTAAGAGGCTTAAGGTATCTTCTTCAGTATTTGTGCCTCCAACTTTTAGTGGGTCTCCATGTAGTATTAGTTGTTGCTCTCCTTATTATGGTTATGATTCTCCACATGTATGA	840	0.4714	MAGSESNRPIKKIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARTLRGENARTNFASPASQSVADESESKAKHGLNFAALKAKLSKNLQNIMTRSGSSETTSSKSRVSDHITFASIFHRRRSFLPFQISSSSLETMKNMEIMVQPSIIVPPAKETDNRQPSSWENSSVSDDCGYSDHLVGRRQTVTAESTMSEGSDAGEVSTVGDQGLMEKVMGWINNSPDEQGSRTKRLKVSSSVFVPPTFSGSPCSISCCSPYYGYDSPHV	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g1024	279	SMART	rav1_2	15	78	IPR001471	GO:0003700\|GO:0006355
	Acco07g1024	279	FunFam	ethylene-responsive transcription factor RAP2-11	14	73	-	-
	Acco07g1024	279	CDD	AP2	14	72	IPR001471	GO:0003700\|GO:0006355
	Acco07g1024	279	ProSiteProfiles	AP2/ERF domain profile.	15	72	IPR001471	GO:0003700\|GO:0006355
	Acco07g1024	279	MobiDBLite	consensus disorder prediction	166	187	-	-
	Acco07g1024	279	Pfam	AP2 domain	15	64	IPR001471	GO:0003700\|GO:0006355
	Acco07g1024	279	Gene3D	AP2/ERF domain	14	73	IPR036955	GO:0003700\|GO:0006355
	Acco07g1024	279	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	14	169	-	-
	Acco07g1024	279	SUPERFAMILY	DNA-binding domain	15	72	IPR016177	GO:0003677
	Acco07g1024	279	MobiDBLite	consensus disorder prediction	171	187	-	-
	Acco07g1024	279	PRINTS	Ethylene responsive element binding protein signature	16	27	IPR001471	GO:0003700\|GO:0006355
	Acco07g1024	279	PRINTS	Ethylene responsive element binding protein signature	38	54	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g1024	Acco-ChrAcco07	13913981	13914820	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g1024	15	73	AP2-EREBP Transcription Factor Family	AT5G19790	71.186	1.56e-25	100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco07g1024		AP2	3.9e-15	CL0081