Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0899 ATGGAACCCTCAATTGAACCCTTGCGAGTCATCATCTGTGAAATCTGTACAGACACCAAACGAATTACCCAGATGATCAAGAACCCCACATGCCACCATTCGTATTGCTCTGATTGTATGACAAAACATGTGGCCACCAAAATCCAAGACAGTATAATACCAGTTCCATGTCCTGGTTTGGATTGTGGAAGTGTTTTTGAGCTGGAAGCTTGTCGGCCATGGCTTCCCGAAAACTTAATTGAAAGGTGGGATAAGGCTCGGTGTGAAGTTCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCCTTTGAGGATTGTTCAGCCATGATGCTGGTTGAGAATGAGAAAGATAAAAAAACTTCAAGGAAAACAGAGTGCCCTGTTTGCCTTAGAGTGTTCTGTCCCAGATGTAATGTTCCATGGCATACCGGAGTTTCCTGTAAGAAATACCAGAAACTGAATAAGAACAAGAGAGAGAGGGAAGATCGGCTTGTGAGAAAGCTTGCTAAAGAACAGAGATGGCAAAGGTGTCCAAAGTGCAAGTTTTATGTGGAGAAGATCAGTGGATGCGTGCGTGTCACTTGCAGGTGCAAATATCAGTTTTGTTATGCTTGTGGAAGAAAATGGAGTTACTTTCATGCAACCAGATTCGGGTGTCTAAGCAATCAACTACTCCAATTTTTTTGTTTGTAA 690 0.4232 MEPSIEPLRVIICEICTDTKRITQMIKNPTCHHSYCSDCMTKHVATKIQDSIIPVPCPGLDCGSVFELEACRPWLPENLIERWDKARCEVLFLQVPKFYCPFEDCSAMMLVENEKDKKTSRKTECPVCLRVFCPRCNVPWHTGVSCKKYQKLNKNKREREDRLVRKLAKEQRWQRCPKCKFYVEKISGCVRVTCRCKYQFCYACGRKWSYFHATRFGCLSNQLLQFFCL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0899 229 Pfam IBR domain, a half RING-finger domain 97 146 IPR002867 GO:0008270
Acco07g0899 229 Pfam IBR domain, a half RING-finger domain 162 213 IPR002867 GO:0008270
Acco07g0899 229 FunFam RBR-type E3 ubiquitin transferase 9 94 - -
Acco07g0899 229 CDD Rcat_RBR_unk 172 208 - -
Acco07g0899 229 CDD BRcat_RBR_unk 96 149 - -
Acco07g0899 229 ProSiteProfiles TRIAD supradomain profile. 9 229 IPR044066 -
Acco07g0899 229 SMART ibrneu5 158 218 IPR002867 GO:0008270
Acco07g0899 229 SMART ibrneu5 81 146 IPR002867 GO:0008270
Acco07g0899 229 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 217 IPR031127 GO:0004842|GO:0016567
Acco07g0899 229 SUPERFAMILY RING/U-box 10 89 - -
Acco07g0899 229 ProSiteProfiles Zinc finger RING-type profile. 13 58 IPR001841 -
Acco07g0899 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Acco07g0899 229 Gene3D - 98 147 - -
Acco07g0899 229 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Acco07g0899 229 SUPERFAMILY RING/U-box 88 151 - -
Acco07g0899 229 Pfam Zinc finger, C3HC4 type (RING finger) 13 58 IPR018957 GO:0046872
Acco07g0899 229 Gene3D - 148 222 - -
Acco07g0899 229 SUPERFAMILY RING/U-box 159 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0899 Acco-ChrAcco07 11704723 11706837 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0899 31 205 C3H Transcription Factor Family AT2G19610 28.804 5.28e-18 80.1