Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Acco07g0897 | ATGGCTCAAGCTTTCTTTGAACTTATCTATGAATTTTGTTTCCTTTTCTTGTTCTTCTCTTGTTTTATCGTCCCCAAACTTGTCCGCTCTTTTCTGTTTGATCGTCAACATCTTCCCTGTCCTGAATTCTGTACCCATAGAAACAATTCTTTTTCTTCTTCTTCAGCTTCTTCCAATTCTTCTTCTTCCTCTCCTAACCTAGAAACAGAGAATCTGAAGCCTTCAATTAAAACAGGGGAACCCTTGCAAGTCATTTGTGAAATCTGTGTAGAAACTAAATGGGTTACCCAAATGATCAAGAACAAGACTTGCGACCATTCTTATTGCTCTGATTGTATGACAAAACATGTGGCCACGAAAATCCAAGAGACCATAACAGTAGTTTCATGTCCTGGTTTGGGTTGTAAAACTGTTTTTGAGCTCGAAGTTTGTCGACCATGGCTTCCCAAGGACTTAATTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCATTTAAGGATTGTTCTGCCATGATGCTGGTTGAGAATGAAATAGATCGACGAGCTGCAGGGGAAACAGAGTGCCCTCTTTGCCATAGAATCTTCTGTCTATGGTGTAATGTTCCATGGCATAGTGGAGTTAACTGTGAGGAATACCAGAAACTAGACGAGCATGAGAGGCACAGGGAAGATTTGCTTTTGAGAAAGCTTGCTATAGAAAATAAATGGCAAAGGTGCCCAAAGTGTAAGTTTTATGTGGAGAAGAAAGATGGATGCTCGCATATCATTTGCAGGTTAGTTTTCTAG | 816 | 0.4044 | MAQAFFELIYEFCFLFLFFSCFIVPKLVRSFLFDRQHLPCPEFCTHRNNSFSSSSASSNSSSSSPNLETENLKPSIKTGEPLQVICEICVETKWVTQMIKNKTCDHSYCSDCMTKHVATKIQETITVVSCPGLGCKTVFELEVCRPWLPKDLIERWDQALCEALFLQVPKFYCPFKDCSAMMLVENEIDRRAAGETECPLCHRIFCLWCNVPWHSGVNCEEYQKLDEHERHREDLLLRKLAIENKWQRCPKCKFYVEKKDGCSHIICRLVF | 271 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Acco07g0897 | 271 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 131 | IPR001841 | - | |
Acco07g0897 | 271 | ProSitePatterns | Zinc finger RING-type signature. | 104 | 113 | IPR017907 | - | |
Acco07g0897 | 271 | FunFam | RBR-type E3 ubiquitin transferase | 82 | 167 | - | - | |
Acco07g0897 | 271 | CDD | BRcat_RBR_unk | 169 | 222 | - | - | |
Acco07g0897 | 271 | SUPERFAMILY | RING/U-box | 84 | 163 | - | - | |
Acco07g0897 | 271 | Pfam | IBR domain, a half RING-finger domain | 169 | 219 | IPR002867 | GO:0008270 | |
Acco07g0897 | 271 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 55 | 267 | IPR031127 | GO:0004842|GO:0016567 | |
Acco07g0897 | 271 | Gene3D | - | 216 | 269 | - | - | |
Acco07g0897 | 271 | SMART | ibrneu5 | 154 | 219 | IPR002867 | GO:0008270 | |
Acco07g0897 | 271 | SUPERFAMILY | RING/U-box | 229 | 267 | - | - | |
Acco07g0897 | 271 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 164 | IPR013083 | - | |
Acco07g0897 | 271 | SUPERFAMILY | RING/U-box | 158 | 224 | - | - | |
Acco07g0897 | 271 | Coils | Coil | 225 | 245 | - | - | |
Acco07g0897 | 271 | ProSiteProfiles | TRIAD supradomain profile. | 82 | 271 | IPR044066 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Acco07g0897 | Acco-ChrAcco07 | 11675404 | 11676219 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Acco07g0897 | 86 | 268 | C3H Transcription Factor Family | AT2G19610 | 24.479 | 5.10e-12 | 63.5 |