Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0897 ATGGCTCAAGCTTTCTTTGAACTTATCTATGAATTTTGTTTCCTTTTCTTGTTCTTCTCTTGTTTTATCGTCCCCAAACTTGTCCGCTCTTTTCTGTTTGATCGTCAACATCTTCCCTGTCCTGAATTCTGTACCCATAGAAACAATTCTTTTTCTTCTTCTTCAGCTTCTTCCAATTCTTCTTCTTCCTCTCCTAACCTAGAAACAGAGAATCTGAAGCCTTCAATTAAAACAGGGGAACCCTTGCAAGTCATTTGTGAAATCTGTGTAGAAACTAAATGGGTTACCCAAATGATCAAGAACAAGACTTGCGACCATTCTTATTGCTCTGATTGTATGACAAAACATGTGGCCACGAAAATCCAAGAGACCATAACAGTAGTTTCATGTCCTGGTTTGGGTTGTAAAACTGTTTTTGAGCTCGAAGTTTGTCGACCATGGCTTCCCAAGGACTTAATTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAAGTGCCTAAATTTTACTGTCCATTTAAGGATTGTTCTGCCATGATGCTGGTTGAGAATGAAATAGATCGACGAGCTGCAGGGGAAACAGAGTGCCCTCTTTGCCATAGAATCTTCTGTCTATGGTGTAATGTTCCATGGCATAGTGGAGTTAACTGTGAGGAATACCAGAAACTAGACGAGCATGAGAGGCACAGGGAAGATTTGCTTTTGAGAAAGCTTGCTATAGAAAATAAATGGCAAAGGTGCCCAAAGTGTAAGTTTTATGTGGAGAAGAAAGATGGATGCTCGCATATCATTTGCAGGTTAGTTTTCTAG 816 0.4044 MAQAFFELIYEFCFLFLFFSCFIVPKLVRSFLFDRQHLPCPEFCTHRNNSFSSSSASSNSSSSSPNLETENLKPSIKTGEPLQVICEICVETKWVTQMIKNKTCDHSYCSDCMTKHVATKIQETITVVSCPGLGCKTVFELEVCRPWLPKDLIERWDQALCEALFLQVPKFYCPFKDCSAMMLVENEIDRRAAGETECPLCHRIFCLWCNVPWHSGVNCEEYQKLDEHERHREDLLLRKLAIENKWQRCPKCKFYVEKKDGCSHIICRLVF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0897 271 ProSiteProfiles Zinc finger RING-type profile. 86 131 IPR001841 -
Acco07g0897 271 ProSitePatterns Zinc finger RING-type signature. 104 113 IPR017907 -
Acco07g0897 271 FunFam RBR-type E3 ubiquitin transferase 82 167 - -
Acco07g0897 271 CDD BRcat_RBR_unk 169 222 - -
Acco07g0897 271 SUPERFAMILY RING/U-box 84 163 - -
Acco07g0897 271 Pfam IBR domain, a half RING-finger domain 169 219 IPR002867 GO:0008270
Acco07g0897 271 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 267 IPR031127 GO:0004842|GO:0016567
Acco07g0897 271 Gene3D - 216 269 - -
Acco07g0897 271 SMART ibrneu5 154 219 IPR002867 GO:0008270
Acco07g0897 271 SUPERFAMILY RING/U-box 229 267 - -
Acco07g0897 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 164 IPR013083 -
Acco07g0897 271 SUPERFAMILY RING/U-box 158 224 - -
Acco07g0897 271 Coils Coil 225 245 - -
Acco07g0897 271 ProSiteProfiles TRIAD supradomain profile. 82 271 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0897 Acco-ChrAcco07 11675404 11676219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0897 86 268 C3H Transcription Factor Family AT2G19610 24.479 5.10e-12 63.5