Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0896 ATGGCTCAAAATTCCTCCTCTGATCTTCTCTGTTCTGATGATCCTTTCCTCTCTGCTCTGTTTCACGCTGATGATGATGATAATTTTTGTGCCCCATTTACCGATGATGAATGTGCCAAACGCTTGCAGTTTCAGGAAACCCTCTATTCCTCCATCACTTCAAAAAATCCCAAAAATGATCCTCAGTCATCATCATCATCATCGTCACCGCCATCATCGTCATCTTCTTCTTCCTTGCACCTTTTACCTTCATCTTCATCATCTTCCCCGGCTTTAAAAATTGCTGACATTTGCCCTACCCCGGAAACTGAGCACCTGGAATACTCAGATGAAACGGATGAATCCTGGCAAGTCATTTGTGAAATCTGTGCTGAAACTAAAGAGGCTTCCCAGATGTTCCAAAATCAGAGATGCCACCACTCGTTTTGTTCTGATTGTGTCACAAAACATGTGGCAACAAAAATTCAGGAGAACATTACAGAAGTTTCTTGCCCTGATTTGGATTGTAAGAATGTTGTTGGGCTTGATGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGATAGGTGGGATCAAGCTCTGTGTGAAGCTATGTTTCTGGCAACCCCTAAATTTTACTGCCCCTTTAAGGATTGTTCTGCCATGTCGCTGATGGAGAATGAAGAAGATATAATGGAAGCAGAGTGCCCTTATTGCCATAGATTGTTCTGTGCAAGGTGTGAGGTGCCATGGCATCCTGGGATTGAATGTGAGGAATTTCAGAGACTAAATGAAAATGAAAAAGAGAGGCAAGATTTGATTGTGAGAGAGCTTGCTAAAGAGAAGAAGTGGAGAAGGTGTCCCAATTGTAAGTTCTATGTGGAGAAGGACGGAGGATGCTTGCACATCACTTGCAGGTGCAAATATGAGTTTTGCTATGGGTGTGGAGAACAGTGGACTTCTACTCATGGAGGCTGCCAAACAAATTAA 969 0.4334 MAQNSSSDLLCSDDPFLSALFHADDDDNFCAPFTDDECAKRLQFQETLYSSITSKNPKNDPQSSSSSSSPPSSSSSSSLHLLPSSSSSSPALKIADICPTPETEHLEYSDETDESWQVICEICAETKEASQMFQNQRCHHSFCSDCVTKHVATKIQENITEVSCPDLDCKNVVGLDACRPWLPKDLLDRWDQALCEAMFLATPKFYCPFKDCSAMSLMENEEDIMEAECPYCHRLFCARCEVPWHPGIECEEFQRLNENEKERQDLIVRELAKEKKWRRCPNCKFYVEKDGGCLHITCRCKYEFCYGCGEQWTSTHGGCQTN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0896 322 ProSiteProfiles TRIAD supradomain profile. 116 322 IPR044066 -
Acco07g0896 322 Pfam Zinc finger, C3HC4 type (RING finger) 120 165 IPR018957 GO:0046872
Acco07g0896 322 ProSiteProfiles Zinc finger RING-type profile. 120 165 IPR001841 -
Acco07g0896 322 FunFam RBR-type E3 ubiquitin transferase 252 322 - -
Acco07g0896 322 SMART ibrneu5 260 319 IPR002867 GO:0008270
Acco07g0896 322 SMART ibrneu5 188 250 IPR002867 GO:0008270
Acco07g0896 322 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 312 IPR031127 GO:0004842|GO:0016567
Acco07g0896 322 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Acco07g0896 322 SUPERFAMILY RING/U-box 117 197 - -
Acco07g0896 322 Pfam IBR domain, a half RING-finger domain 269 319 IPR002867 GO:0008270
Acco07g0896 322 Pfam IBR domain, a half RING-finger domain 194 250 IPR002867 GO:0008270
Acco07g0896 322 MobiDBLite consensus disorder prediction 50 93 - -
Acco07g0896 322 Gene3D - 248 322 - -
Acco07g0896 322 SUPERFAMILY RING/U-box 261 320 - -
Acco07g0896 322 SUPERFAMILY RING/U-box 194 255 - -
Acco07g0896 322 CDD Rcat_RBR_unk 276 312 - -
Acco07g0896 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 199 IPR013083 -
Acco07g0896 322 FunFam RBR-type E3 ubiquitin transferase 115 201 - -
Acco07g0896 322 CDD BRcat_RBR_unk 201 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0896 Acco-ChrAcco07 11638235 11639643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0896 120 309 C3H Transcription Factor Family AT2G19610 30.000 5.24e-22 94.0