Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0886 ATGAAGCTCAAAGTGAAGACTTTGAAAGGAAAAAATTTTGAAATCGTGGTCCAGCTGTCCGACACTGTCATGGCAGTTAAGAAGAATATTGAAGATATACAAGGAAAAGATAATTATCCATGTGGACAGCAATTACTGATTTACGGTGGCAAGGTGTTAAAAGATGATACTACACTAGCAGAGAACAACGTCTCTGAAGAAGGATTCTTTGTTGTAATGCTTAGTAAGAATAAGACCTTCAGTTCAGCTGGAGCTTCATCCACTCAGCCTGCTAGTAATACAACAACTGTATCAGCATCAAATTCCACTGCAGTGCCCAATCCACCTGTAGAAACTCAGACCGCTAGCAACAGAACATCTGCCACAGATGTCACAATGACTAATGTATCTACAGATACTTATGGTGAGGCTGCTTCAAATTTAGTTGCTGGTACTAATCTTGAACAGACTATCCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGAGACAGTTAGTCGTGCTCTTCGGGCAGCTTTTAATAACCCAGAGCGTGCTATAGATTACTTGTATTCAGGAATTCCTGAAGCAACTGAAGTTGCTGAACCAGTGGCTCAATTTCCAGTTAGTCAGACAACTGAAACAAGTGAGGCTACTGTCCGAGGTGCTCATGGAGCACCTAACTCATCTCCCTTAAACATATTTCCTCAGGAGGCACTTGGTGCTGATGCTGGACTTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTGCGGTCAATGGTGCATTCCAATCCTCAAATCTTACAGCCTGTGCTTCAGGAGCTGGGAAAGCAGAATCCCAATCTTTTAAGAATGATTCAAGAGCATAATGCTGAGTTTCTCCAGTTAATTAATGAGCCAGTTGAAGGTTCTGAAGGGGACTTATTTGACCAGCCTGAGCTAGAGATGCCTCATTCTATCAATGTGACCCCAGCTGAGCAGGAAGTAATTGGAAGGCTTGAGGCCTTGGGATTTGATAGAGCCTCAGTTATAGAGGCATTTTTGGCATGCGACCGGGATGAGCAGTTGGCAGCCAACTATTTGTTGGAGAATGCTGGAGATTTTGACGATTGA 1110 0.4324 MKLKVKTLKGKNFEIVVQLSDTVMAVKKNIEDIQGKDNYPCGQQLLIYGGKVLKDDTTLAENNVSEEGFFVVMLSKNKTFSSAGASSTQPASNTTTVSASNSTAVPNPPVETQTASNRTSATDVTMTNVSTDTYGEAASNLVAGTNLEQTIQQIMDMGGGNWDRETVSRALRAAFNNPERAIDYLYSGIPEATEVAEPVAQFPVSQTTETSEATVRGAHGAPNSSPLNIFPQEALGADAGLGSLDFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPNLLRMIQEHNAEFLQLINEPVEGSEGDLFDQPELEMPHSINVTPAEQEVIGRLEALGFDRASVIEAFLACDRDEQLAANYLLENAGDFDD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0886 369 Gene3D - 235 300 IPR036353 GO:0003684|GO:0006289|GO:0043161
Acco07g0886 369 SMART ubq_7 1 75 IPR000626 GO:0005515
Acco07g0886 369 Gene3D - 1 80 - -
Acco07g0886 369 FunFam UV excision repair protein RAD23 1 80 - -
Acco07g0886 369 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Acco07g0886 369 Coils Coil 271 291 - -
Acco07g0886 369 SMART uba_6 325 362 IPR015940 -
Acco07g0886 369 SMART uba_6 147 187 IPR015940 -
Acco07g0886 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 323 363 IPR015940 -
Acco07g0886 369 FunFam UV excision repair protein RAD23 homolog 140 190 - -
Acco07g0886 369 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Acco07g0886 369 FunFam UV excision repair protein RAD23 B 235 300 - -
Acco07g0886 369 CDD Ubl_Rad23 1 74 - -
Acco07g0886 369 Gene3D - 140 190 - -
Acco07g0886 369 Gene3D - 316 364 - -
Acco07g0886 369 FunFam UV excision repair protein RAD23 homolog 316 364 - -
Acco07g0886 369 Pfam UBA/TS-N domain 325 360 IPR015940 -
Acco07g0886 369 Pfam UBA/TS-N domain 147 185 IPR015940 -
Acco07g0886 369 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 145 188 IPR015940 -
Acco07g0886 369 SUPERFAMILY UBA-like 145 195 IPR009060 GO:0005515
Acco07g0886 369 Pfam XPC-binding domain 244 299 IPR015360 GO:0003684|GO:0006289|GO:0043161
Acco07g0886 369 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Acco07g0886 369 SUPERFAMILY UBA-like 304 367 IPR009060 GO:0005515
Acco07g0886 369 PRINTS DNA repair protein Rad23 signature 336 350 IPR004806 GO:0006289
Acco07g0886 369 PRINTS DNA repair protein Rad23 signature 351 366 IPR004806 GO:0006289
Acco07g0886 369 PRINTS DNA repair protein Rad23 signature 270 292 IPR004806 GO:0006289
Acco07g0886 369 PRINTS DNA repair protein Rad23 signature 319 335 IPR004806 GO:0006289
Acco07g0886 369 SMART CBM 242 285 IPR006636 -
Acco07g0886 369 SUPERFAMILY XPC-binding domain 241 307 IPR036353 GO:0003684|GO:0006289|GO:0043161
Acco07g0886 369 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 358 - -
Acco07g0886 369 CDD UBA1_Rad23_plant 141 190 - -
Acco07g0886 369 NCBIfam UV excision repair protein Rad23 1 368 IPR004806 GO:0006289
Acco07g0886 369 MobiDBLite consensus disorder prediction 82 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0886 Acco-ChrAcco07 11492035 11498951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0886 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 2.58e-08 50.4