Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0884 ATGACGGATGCTTGCAAAAAGTCCTCCGTTTTAGGTCAGTCATATAGTTCTCTCTATGTCAATCCTCTCACTGAACTCAGGCATAGCCGTAGCTGCAGCGACAGTGGCAGCTTAGCTTCCAAATGCCAGAAATGTGAAGATTTCTCGCTCAGAGAAGTTTCAACTGATAGTAAAGAGAATGTCACGCCCAAGAAGAAAGATATAACTCGCTTTTGTGACAAGGAAAATGCTGTGCCTGCAAATGGGTCATCTTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCTACAGATAGAATTTTGAAGCCTAACTCGCTTCAGTTCTGTTTGCAAATGAACGAGCCTGAAAAGGCTTTCGGGTGCAAGATATGGGATAATGTATATTCTGAAAATTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCAGAGGTAGCCCCATCTTCTTCCTGGTCAACCTTGCCCAATAAATCTTTGATCTGTAGACCGTTGCCTATAGATATTGGAAGGTGTACATGCATCATTGTAAAGGAAGCAAAGCCAGAAGGACTACATGGGGGCACTATGTATTCGCTTTATACCTATGAAGGTCAAGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGCGGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAATAGTAACGACTAACGGATATCGCCATAATTTGCACGATAAACAGTTAAAACCATCACTTGCTGCTGTGATGTTTATACCTACAGCAGCGTCATGTACTGGACGCTACAGAAGCATGAGAGCATATGTACCAAAGCATCAATCAATGTCACTAAAGAACATAAGCCAGGACTCTTTTGATTTGGAATGAAATCTGGAAGAAGATCATCAAGTAAGAAGAAGAAACTATGAAGCAAGAGGGATTTTGGAGCAGTTGAAATTTTTCTTTCCTTCAGCCTACTATTCTTGCCAGGTACAACATATCAAACGACTGCCCATAGATTGGGAGGGAAAGTCGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAATCAGACTTCAAAGCAATTTGAATTTGACTTTAAAGATAAAGGAAGAGCAGAACTTGGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAGACAATTCTTCAACTGGGTAGAATCGGAAAATCGAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAGGCGTTCTGCTTAAGTTTATCTTCCATTGATACCAAGCTCTGTTGCTCTCTGTAG 1338 0.4081 MTDACKKSSVLGQSYSSLYVNPLTELRHSRSCSDSGSLASKCQKCEDFSLREVSTDSKENVTPKKKDITRFCDKENAVPANGSSSLPKHFSKSKSLSTDRILKPNSLQFCLQMNEPEKAFGCKIWDNVYSENLSSLKIWDFSDSEVAPSSSWSTLPNKSLICRPLPIDIGRCTCIIVKEAKPEGLHGGTMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDDSFLGIVTTNGYRHNLHDKQLKPSLAAVMFIPTAASCTGRYRSMRAYVPKHQSMSLKNISQDSFDLEXNLEEDHQVRRRNYEARGILEQLKFFFPSAYYSCQVQHIKRLPIDWEGKSDKVHQLFSRVPLYNNQTSKQFEFDFKDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRIGKSKFVMDYRYPLTGYQAFCLSLSSIDTKLCCSL 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0884 445 PRINTS Tubby superfamily signature 381 397 IPR000007 -
Acco07g0884 445 PRINTS Tubby superfamily signature 401 420 IPR000007 -
Acco07g0884 445 PRINTS Tubby superfamily signature 422 444 IPR000007 -
Acco07g0884 445 Pfam Tub family 163 439 IPR000007 -
Acco07g0884 445 SUPERFAMILY Tubby C-terminal domain-like 149 443 IPR025659 -
Acco07g0884 445 Gene3D Tubby Protein; Chain A 157 438 IPR025659 -
Acco07g0884 445 PANTHER TUBBY-RELATED 29 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0884 Acco-ChrAcco07 11471468 11483506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0884 20 295 TUB Transcription Factor Family AT1G16070 48.475 1.06e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco07g0884 Tub 8.6e-30 CL0395