Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0835 ATGGATGGTTGCAAAAAATCCTCCATATCGAACCAGTCATACAATTCTCTCTATGTCAATCCCCTCACTGAACTCAGGCATAGCCGAAGCTGTGGCTGTGACTATGGCCGTTTAGCTACCAAAGGTGACGACTTTGAAGGTTTCACTCACCGAGCCTCCAAAATATTTACAGATAACAAAGAGAATGTGACGCCTAACAAGAAAGAAGGTGTAGTTTCTTCTGGTGATGATGACAAGGAAAACGCAGTGCCCAAAAAGTTCTCAAATTCTCGGTCCTTGTCCACTGATAGGATCTTGAAGCCTAATTCGCTTCAGTTCTGCATGCAAATGAATGATTCTGAAAAGGCTTTTGCGTCTTCTAAGATATGGGATCGTTTTGATTTGGAGAATTCCAGTTCTATGAATGTTTGGGACTTTTCTGATTCTGAAGCAGCTCCAGCTTCATCCTGGTCAACTCTGCCAAACAAGTCTTTGATCTGTAGACCATTGCCCGTTGATGTTGGAAGATGTACATGTGTTATTGTGAAGGAAGCCTCGCCTGAAGGACTATCAGGGGGCACATTGTTTTCTCTTTATACCTGTGAAGGGAAAGGAAGACAGAACAGGAAACTGGCTGTGGCTTATCATAAGAGGCGAAATGGGAGATCTCAGTTCACCATAGCTCAGAATGTAAAAGGGCTTTTGTCCAATTCAGATAATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGTCATGATTGCCGGGGTAAACAACCAAAACCGCCTCTTGCTGTCGTGGCATTCATACCAACTATAGCAACATGTACTGGAAGTTACAGAAGCATGAGGGCATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAATCAGGTCCAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGCTGGACAAAGTTCATCAATTATTCTCAAGAGTTCCAATTTACAACAAGAGTTCAAAGCAGTTTGAACTTGACTTCAGAGATAAAGGAAGATCAGAACTTCAGATCCAGACATCAGTTAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAAACAATTCTGCAGTTAGGCAGGGTGGCAAAATCAAAGTTTGTTTTGGATTACAGACATCCTTTGACAGGTTACCAAGCATTCTGCATATGCTTGGCTTCCATTGATGCAAAGCTTTGCTGCACAGTTTAG 1239 0.4221 MDGCKKSSISNQSYNSLYVNPLTELRHSRSCGCDYGRLATKGDDFEGFTHRASKIFTDNKENVTPNKKEGVVSSGDDDKENAVPKKFSNSRSLSTDRILKPNSLQFCMQMNDSEKAFASSKIWDRFDLENSSSMNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDVGRCTCVIVKEASPEGLSGGTLFSLYTCEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDNSFLGTVIANFMGSKYHIWDQGYRHDCRGKQPKPPLAVVAFIPTIATCTGSYRSMRAYVPKHQSMSLKNTNQVQHIKGLPTDWEEKLDKVHQLFSRVPIYNKSSKQFELDFRDKGRSELQIQTSVKNFQLTLEENGRQTILQLGRVAKSKFVLDYRHPLTGYQAFCICLASIDAKLCCTV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0835 412 MobiDBLite consensus disorder prediction 59 85 - -
Acco07g0835 412 MobiDBLite consensus disorder prediction 59 89 - -
Acco07g0835 412 Pfam Tub family 161 405 IPR000007 -
Acco07g0835 412 PANTHER TUBBY-RELATED 78 409 - -
Acco07g0835 412 SUPERFAMILY Tubby C-terminal domain-like 147 411 IPR025659 -
Acco07g0835 412 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Acco07g0835 412 PRINTS Tubby superfamily signature 235 259 IPR000007 -
Acco07g0835 412 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Acco07g0835 412 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Acco07g0835 412 Gene3D Tubby Protein; Chain A 155 405 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0835 Acco-ChrAcco07 10784400 10788097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0835 58 305 TUB Transcription Factor Family AT1G16070 54.615 4.13e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco07g0835 Tub 3.7e-41 CL0395