LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g0831	ATGAGAAGACCCCTGCAACGGTATCGTGGAGTACGGCAGAGGCACTGGGGCTCATGGGTCTCCGAGATTCGTCACCCCATCTTGAAGACGAGAATATGGGTGGGGACATTTGAAACAGCAGAAGATGCAGCAAGAGCCTATGATGAAGCAGCCATACTCATGTGTGGTCCTCAAGCGACCACAAACTTCCCCTTCAAACCTAATCTCTCTCCTTCTTCCTCTTCCTCCCTTCTCTCTCCAACTCTGACAATCAAGCTTCTTCAAATGAAGAAAAAAGCTCTTCATCATCATGATCATCATAACCAACAACAACAACAACATAAACACACATCTCTCACCACACATCCTTCCGCCAGCAATGCTGTCACCGTACCAAGCTCTGAGACCGGGTCATGGTCCTCTGAGGCACCACCCTTTCAGCTGCAAGTGCTTGAGGAAGATCACATTGAGCAGATGATTCAAGAGCTACTTCACTATGGTTCCATTGAGCTTTCTTCTCCTTAA	504	0.4782	MRRPLQRYRGVRQRHWGSWVSEIRHPILKTRIWVGTFETAEDAARAYDEAAILMCGPQATTNFPFKPNLSPSSSSSLLSPTLTIKLLQMKKKALHHHDHHNQQQQQHKHTSLTTHPSASNAVTVPSSETGSWSSEAPPFQLQVLEEDHIEQMIQELLHYGSIELSSP	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g0831	167	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	MobiDBLite	consensus disorder prediction	106	135	-	-
	Acco07g0831	167	MobiDBLite	consensus disorder prediction	90	135	-	-
	Acco07g0831	167	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	6	120	-	-
	Acco07g0831	167	CDD	AP2	6	64	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	SUPERFAMILY	DNA-binding domain	7	65	IPR016177	GO:0003677
	Acco07g0831	167	FunFam	Ethylene-responsive transcription factor 2	6	66	-	-
	Acco07g0831	167	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Acco07g0831	167	Gene3D	AP2/ERF domain	6	66	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g0831	Acco-ChrAcco07	10605847	10606856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g0831	1	166	AP2-EREBP Transcription Factor Family	AT5G25190	58.286	1.53e-60	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco07g0831		AP2	2.2e-12	CL0081