Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0801 ATGCTGACGCAGGCAATAACACCCAGTTCGAGTACAGAGATGGCCGGACCATCGACAGACGAAATTATCCTTTCAGGCGAGCGAAGTGAATCTTCATTCTCGTCATTCTCTTTGTCCGATATAACTCAGGCTTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTAGAGGCGTCATGCATCTCTATCGTGAGGATCCCACTTCTTCCTCGCCTTCTGATCTTCCTGTTGTACGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTTTGCCAGTTCTGTGGTTCATTTATTCTGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAAGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACGGATGGTTTCTACAAGCATTATAATGGGCATCGTTTCTCATCTATGGAGGTGGAAGTTTGTCGTGTTCTGTTTGCATTGGATGTGCAGTACACTGGCCTGATTGAACATGCTCAGGCATCTAATGCTAGCTCGACTGAGCAGCCTACATGTCCGGTGTGCTTAGAGCGATTGGATCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTACATGTTTTGTTTGTCAAACCACTGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGGACATGCCAAAGTACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTATGGGATTATGTGAAAGATAACTATGTTCATAGACTAATCCTGTCCAAAACTGATGGGAAGTTAGTTGAGTTAAACTCTCACTGTGAGCATACAGGAAATGGATGTGGAAGTTGCAGATGTGAGGATAATGCTATGAGTGAGGCTATACTTAACAGCAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTATACTTTGAGTCGTTACTACAAGAAGTAAAAGAAGAAACTGAGAGAGAAATTTCTAAAGCTGTTGAGAAGGCTGTTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGTTTGACAGATGTTATAAGGAGAAGAAATTATTGGATGATCTAAATGAGAATCTACTGAAAAATCATGAGATCTGGAAAGCCAAGATGCTTGAAATTGAAGAAAGGGAGAAAAAGTCCATAAAACTCAAGGATGATAAAATAAGGGCCCTGGAAGAGCAGGTGAAACATATTTCTCATGATTCGTCTTGGAGGTGGGGAGACAACTGTACAGCTGTCCGGGTCAGATGA 1410 0.4156 MLTQAITPSSSTEMAGPSTDEIILSGERSESSFSSFSLSDITQAFPFSSGNPRIEETRGVMHLYREDPTSSSPSDLPVVRKPLVCVLGVPNHMTYADFCQFCGSFILHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNGHRFSSMEVEVCRVLFALDVQYTGLIEHAQASNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSTCFVCQTTENLSICVICGFVGCGKYKAGHAKVHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNGCGSCRCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKFDRCYKEKKLLDDLNENLLKNHEIWKAKMLEIEEREKKSIKLKDDKIRALEEQVKHISHDSSWRWGDNCTAVRVR 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0801 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 304 IPR013083 -
Acco07g0801 469 ProSiteProfiles Zinc finger RING-type profile. 186 226 IPR001841 -
Acco07g0801 469 Coils Coil 351 389 - -
Acco07g0801 469 Pfam Ring finger domain 185 226 IPR001841 -
Acco07g0801 469 ProSiteProfiles Zinc finger UBP-type profile. 220 313 IPR001607 GO:0008270
Acco07g0801 469 SMART ring_2 186 225 IPR001841 -
Acco07g0801 469 PANTHER BRCA1-ASSOCIATED PROTEIN 9 451 - -
Acco07g0801 469 Pfam BRCA1-associated protein 2 77 173 IPR011422 -
Acco07g0801 469 CDD RING-H2_BRAP2 184 227 IPR047243 -
Acco07g0801 469 SUPERFAMILY RING/U-box 176 226 - -
Acco07g0801 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 228 IPR013083 -
Acco07g0801 469 SMART Zf_UBP_1 236 285 IPR001607 GO:0008270
Acco07g0801 469 Coils Coil 409 447 - -
Acco07g0801 469 Pfam Zn-finger in ubiquitin-hydrolases and other protein 237 296 IPR001607 GO:0008270
Acco07g0801 469 SUPERFAMILY RING/U-box 202 301 - -
Acco07g0801 469 CDD RRM_BRAP2_like 84 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0801 Acco-ChrAcco07 10063424 10067321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0801 182 226 C3H Transcription Factor Family AT1G72220 48.936 2.56e-07 50.8