LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco07g0762	ATGGCTTTTTGCCCTATATTTTTCTGTGCAAAGGGTCTCGATCGAAAAGCACGAGGCAAGAAAGCACCTACATGGAAGGTTTTCTCTTTGAAAGAATTACTTTCAGCGACAAATAATTTTAACTATGATAACAAGCTTGAAGAAGCAGAATTTGGCAGTGTCTACTGGGGCCAGCTTTGGAATGGATCACAAATTGCAGTTAAGAGACTGAAAGTTTGTGGTGACAAGGCCTACACAGAATTTGCCATTGAAGTTGAAATATTGGCAAGAGTACAACACAAGAATATTGTTAGCCTGCTTGGATATTGTGCTGAGGAGCAAGAAAGGCTAATTGTCTATGACTATATGCCAAATTTGAGCCTCTTCTCTCAACTTCATGAACAGCATCCTGAAGAATGCCTTCTTGATTGGAACAAACGGATGAACATCGCAATTGGGTCATCTGAGGGCATCGCATATCTTCACCACCAAGTAACGCCACAAATAATCCATAGAGATATCAAAGCAAGAAATGTACTACTTGATTCAGATTTCCAGGCTCGGATTTCTGGTTTTGAATTTGCGGAGTTGATTTCTAACTGGGCAACCCATATGAAAACCAATGTTAAGAGAACTCTCGGCTACCTTGCACCAGAATATGCCTTGCTCGGTAAGGTGTCCATAAGTTGTGATGTTTACAGCTTTGGAATTCTATTGCTAGAGCTTGCTAGTGGTAAGAGACCAATTTTAAAATTGAATGCTACAACGAAGCAATCGATATATGATTGGGCACTTCCTTTAGCCTGTAAGAAGAAATTTAGTGAAATCGTAGATTCAAAGCTTAAGGGAGACTTTGTGGGGGAAGAACTTAAAAGAGTGATTCTCATTGGACTTGTATGTGCCCAAAGTCAGCCTGAGAAGAGACCAACCATGCTTGAGGTGGTAGAGATGCTTAAGGGAGAATCTAAGGATAAGTTATCTCAATTAGAAAAGAATGAATTGTTCACAAACCCTCCAACAATGAAAAACAAAAATGGGCTTCATGTCTCATGA	1032	0.3983	MAFCPIFFCAKGLDRKARGKKAPTWKVFSLKELLSATNNFNYDNKLEEAEFGSVYWGQLWNGSQIAVKRLKVCGDKAYTEFAIEVEILARVQHKNIVSLLGYCAEEQERLIVYDYMPNLSLFSQLHEQHPEECLLDWNKRMNIAIGSSEGIAYLHHQVTPQIIHRDIKARNVLLDSDFQARISGFEFAELISNWATHMKTNVKRTLGYLAPEYALLGKVSISCDVYSFGILLLELASGKRPILKLNATTKQSIYDWALPLACKKKFSEIVDSKLKGDFVGEELKRVILIGLVCAQSQPEKRPTMLEVVEMLKGESKDKLSQLEKNELFTNPPTMKNKNGLHVS	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco07g0762	343	PIRSF	ILK	10	325	-	-
	Acco07g0762	343	CDD	STKc_IRAK	51	313	-	-
	Acco07g0762	343	Gene3D	Phosphorylase Kinase; domain 1	12	115	-	-
	Acco07g0762	343	Pfam	Protein tyrosine and serine/threonine kinase	42	311	IPR001245	GO:0004672\|GO:0006468
	Acco07g0762	343	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	26	335	-	-
	Acco07g0762	343	SMART	serkin_6	40	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g0762	343	FunFam	PTI1-like tyrosine-protein kinase At3g15890	116	327	-	-
	Acco07g0762	343	FunFam	PTI1-like tyrosine-protein kinase At3g15890	12	115	-	-
	Acco07g0762	343	ProSiteProfiles	Protein kinase domain profile.	40	328	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco07g0762	343	Gene3D	Transferase(Phosphotransferase) domain 1	116	329	-	-
	Acco07g0762	343	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	162	174	IPR008271	GO:0004672\|GO:0006468
	Acco07g0762	343	Coils	Coil	305	325	-	-
	Acco07g0762	343	SUPERFAMILY	Protein kinase-like (PK-like)	23	311	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco07g0762	Acco-ChrAcco07	9473996	9476487	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco07g0762	7	314	Trihelix Transcription Factor Family	AT1G70460	41.693	9.18e-80	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Acco07g0762		PK_Tyr_Ser-Thr	1.1e-40	CL0016