Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco07g0726 ATGAGTGACGCCTCTTCTTCCGCGTTTCAATTTGATGGTGATGAGAAGTCCCCTGCCTCACTTGACTTTGAATTTGAACACTCATCGTTCAAGAATCGCGCAAATCCTTCGACACTCCCGAATTCGAGGGCACATGTACTGAACGATGCGAGGACTCGAAATTTCAAGACTCAACTCTGCAGAAGGTTTAGACAGGGAATATGTACTATGGGGTCCGATTGTAGTTTTGCTCATTCCGTTGGAGAGCTTCGGAGGCAAGAATTTGGTAATGACGATAGGTCATTTCAAGAACCTAAAATATGCAGAATGTTCTATCAAGGGCAACAATGCTCTTATGGAAACACCTGCCGTTTCCTTCATACAAGGCCTGCCACTGTGAATTCTAGAGACACTGCAACAGAAGTAATTCATATTGGACATGGTAAAAGAAAATATGATCAATTGGAACTCAAGAGTGGGTTTGATGAGAGTTCTAATGGTGAAGTGAATCCAAAGAGAGAGACGTTGAAGACAAAGAAGTGCATCAAGTGGGACATGAAAGGGCATTGCCCGTATGGAGATATGTGTCGCTTTGCTCATGGGGAAGCAGAATCAGTGAAGCTTGATGGCCACTCAACTGCTGAGTGCAGGGTAGAGCGAACTTCTGCTTCTGCTACAAATGTTTCAACTGGCACTTTTCTCAATAAATTGAAAGAAACATTTGCATGGAATTACAAATTCAACAGAAAGGAACTCCACAGGATCAGTCGCATCTATGCTGATTGGATTGAAGAATAA 777 0.4286 MSDASSSAFQFDGDEKSPASLDFEFEHSSFKNRANPSTLPNSRAHVLNDARTRNFKTQLCRRFRQGICTMGSDCSFAHSVGELRRQEFGNDDRSFQEPKICRMFYQGQQCSYGNTCRFLHTRPATVNSRDTATEVIHIGHGKRKYDQLELKSGFDESSNGEVNPKRETLKTKKCIKWDMKGHCPYGDMCRFAHGEAESVKLDGHSTAECRVERTSASATNVSTGTFLNKLKETFAWNYKFNRKELHRISRIYADWIEE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco07g0726 258 SMART c3hfinal6 54 80 IPR000571 GO:0046872
Acco07g0726 258 SMART c3hfinal6 97 122 IPR000571 GO:0046872
Acco07g0726 258 SMART c3hfinal6 168 195 IPR000571 GO:0046872
Acco07g0726 258 Pfam CCCH-type zinc finger 99 120 IPR041367 -
Acco07g0726 258 SUPERFAMILY CCCH zinc finger 95 123 IPR036855 GO:0046872
Acco07g0726 258 Gene3D - 88 147 - -
Acco07g0726 258 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Acco07g0726 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Acco07g0726 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 170 195 IPR000571 GO:0046872
Acco07g0726 258 PANTHER CCCH ZINC FINGER/TIS11-RELATED 40 123 IPR045877 GO:0003729
Acco07g0726 258 ProSiteProfiles Zinc finger C3H1-type profile. 54 81 IPR000571 GO:0046872
Acco07g0726 258 SUPERFAMILY CCCH zinc finger 53 84 IPR036855 GO:0046872
Acco07g0726 258 ProSiteProfiles Zinc finger C3H1-type profile. 168 196 IPR000571 GO:0046872
Acco07g0726 258 SUPERFAMILY CCCH zinc finger 168 197 IPR036855 GO:0046872
Acco07g0726 258 Gene3D - 48 86 - -
Acco07g0726 258 Gene3D - 163 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco07g0726 Acco-ChrAcco07 8978948 8980785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco07g0726 56 121 C3H Transcription Factor Family AT1G68200 35.211 1.87e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco07g0726 zf-CCCH 3.7e-07 CL0537